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Wednesday, 13 November 2024

Tubular fossils from the Terminal Ediacaran La Ciénega Formation of Sonora State, Mexico.

The first fossils of organisms with mineralized skeletons appear in strata from the Terminal Ediacaran, between about 550 and 538 million years ago. This appearance coincides with the decline of the organisms of the 'classical' Ediacaran White Sea Fauna. One of the most abundant of these early mineralized fossils is Cloudina, a diverse group of fossils with a cone-in-cone or funnel-in-funnel structure, although the extent to which Cloudina was mineralized appears to have been variable, with some forms heavily mineralized, some only lightly so, and others apparently having skeletons made from tough organic materials. Cloudina was first described from the Terminal Ediacaran Nama Formation of Namibia, but has since been found in Brazil, Spain, China, Oman, and the United States, and is considered to be a useful index-fossil for the Terminal Ediacaran. 

While Clodina is often the dominant fossil in Terminal Ediacaran assemblages, it is often found alongside a variety of other tubular fossils, such as NamacalathusNamapoikia, and SinotubulitesSinotubulites fossils have a tube-in-tube structure and often have annular or longitudinal ridges, as well as both circular and polygonal cross-sections. Originally described from South China, Sinotubulites has also been described from Mexico, the United States, Brazil, Spain, and Namibia. Interestingly, which specimens of Cloudina have been discovered in many places with what-appear to be drill-holes, possibly the oldest known example of predation by boring, this has not been observed in specimens of Sinotubulites, even when the two are found together, potentially representing the oldest example of prey-selection.

Ediacaran fossils in the Terminal Ediacaran La Ciénega Formation of Sonora State, Mexico, were first described in the mid 1980s. The initial descriptions suggested a variety of tubular fossils were present, including Sinotubulites but not Cloudina. However, subsequent studies of the material led to the conclusion that these 'Sinotubulites' fossils were in fact specimens of Cloudina which had undergone taphonomic alteration, causing them to develop compactional folds which were mis-interpreted as the longitudinal striae of Sinotubulites.

In a paper published in the Journal of Paleontology on 10 October 2024, James Schiffbauer of the Department of Geological Sciences and X-ray Microanalysis Laboratory at University of Missouri, Clara Wong also of the Department of Geological Sciences at University of Missouri, and of the Department of Geosciences at Smith College, Cassidy Davis, also of the Department of Geological Sciences at University of Missouri, Tara Selly, again of the Department of Geological Sciences and X-ray Microanalysis Laboratory at University of Missouri, Lyle Nelson of the Department of Earth Sciences at Carleton University, and Sara Pruss, also of the Department of Geosciences at Smith College, re-examine the La Ciénega Formation fossil assemblage, using modern methodologies to provide new insights into the community structure preserved there.

The Caborca Block in Sonora comprises a series of Late Neoproterozoic and Early Palaeozoic strata laid down in shallow-marine environments on the edge of first a rift zone and then the southern margin of the continent of Laurentia. Here the early Ediacaran Period is represented by the Clemente Formation, which is followed by the Late Ediacaran La Ciénega Formation, and the Cambrian Cerro Rajón Formation. Uranium/lead analysis of zircons from the uppermost layer of the La Ciénega Formation places the age of this at 539.4 million years, the latest part of the Ediacaran. Zircon is a volcanic mineral that forms as liquid magma slowly cools to form solid rock. As zircon forms it can incorporate a variety of different elements into its crystal matrix, including uranium but not lead. This is useful as over time uranium decays to form lead, so any lead in a zircon mineral must be the result of the decay of uranium. Since the decay of uranium to lead occurs at a steady rate, it is possible to determine the age of zircons by measuring the ratio of uranium to lead within them.

Locality map and stratigraphy of the Cerro Clemente section: (1) Map indicating position of Caborca localities (yellow star) in northern Mexico, and plausibly correlative fossiliferous units (grey stars) in the southwestern USA. (2) Satellite image from Google Earth denoting the topography of the Cerro Clemente section with longitude and latitude markers. (3) Geologic map corresponding to the same map view in (2). (4) Photograph of collected coquina block. (5) Stratigraphic section with carbon isotope chemostratigraphy showing position of uranium-lead radiometric date (green star) and sampled fossil horizon (yellow star). Schiffbauer et al. (2024).

Schiffbauer et al. obtained a block from a silicified coquina bed within the La Ciénega Formation at the Cerro Clemente section measuring 15 cm x 10 cm x 10 cm. This was partitioned into a number of fragments, which were then treated to different analysis regimes, including dissolution with acetic acid to allow the collection of fossil residues, scanning electron microscope analysis, elemental analysis using an energy dispersive X-ray spectrometer, and thin sectioning for visual microscopy.

These methods enabled them to identify five distinct forms of tubes. Firstly, there were tube-in-tube structures with annular ridges and possible laminae, interpreted as Sinotubulites. Secondly, there were tubes made up of a series of tightly-fitting funnel-in-funnel structures lacking rims, interpreted as Cloudina. Thirdly, there were funnel-in-funnel structures with thickened and/or pronounced rims, interpreted as the Cloudinomorph Saarina. Fourthly, simple straight tubes, and fifthly, simple curved tubes.

Morphological groupings of fossils (SEM). (1, 2) Form 1, Sinotubulitids in lateral (1) and cross sectional (2) views: (1) lateral view showing diagnostic transverse corrugations; (2) cross section illustrating multiple tube-in-tube construction, with substantial silica overgrowth. (3), (4) Forms 2 and 3, Cloudinomorphs, Cloudina sp. indet. (3) and cf. Saarina sp. indet. (4): (3) Cloudina with two nested funnel units and no thickened apertural rims; (4) the other Cloudinomorph form showing thickened apertural rims with observable drooping imbrication. Also note slight change in growth direction or plastic deformation at tube midpoint, along with slight tubular compression. (5), (6) Forms 4 and 5, smooth tubes that are either straight (5) or sinuous (6). Scale bars are 1 mm (1), (3), (4), and (6), 500 μm (2), and (5).  Schiffbauer et al. (2024).

Of the identifiable individual specimens, 33 were tube-in-tube structures, 20 were non-rimmed funnel-in-funnel structures, 23 were rimmed funnel-in-funnel structures, five were straight smooth tubes, and ten were curved or sinuous tubes. Thus, Cloudinomorphs were the most abundant group, making up about 40% of the sample, with Sinotubulitids comprising about 31% of the sample, and unidentified tubes making up 28%.

The Cloudinomorphs ranged from 0.88 to 2.61 mm in diameter, with an average of 1.51. The rimless forms were on average slightly larger, ranging from 1.13 to 2.61 mm in diameter, with an average of 1.65 mm., while the rimmed forms ranged from 0.88 to 2.26 mm in diameter, with an average of 1.43 mm. The Sinotubulitids were generally larger than the Cloudinomorphs, ranging from 1.11 to 5.23 mm in diameter, with an average diameter of 2.41 mm. The indeterminate tubular fossils ranged from 0.36 to 1.84 mm in diameter, with an average of 1.21, and little difference between the two forms (the straight forms average 1.22 mm in diameter, the sinuous forms 1.17 mm). The length of the fossils was much harder to estimate, as fossils of this size are prone to fragmentation; the longest Cloudinomorph found was 4.49 mm long, the longest Sinotubulitid 5.82 mm, and the longest smooth tube 5.59 mm. 

Seen in thin section, much of the block was made up of densely packed tubular fossils. The majority of these were calcareous in nature, with only a minority of examples being silicified. However, the acid-extraction method produced only silicified specimens, with the calcarious fossils apparently lost from the portion of rock treated this way. This is likely to have given a distorted view of the nature of the total assemblage. Furthermore, the silicified fossils within the block cut into thin sections often had very fine skeletal walls, sometimes as little as 2–3 μm thick, while all of those extracted by acid etching were much courser, with the thinnest being 0.15–0.32 mm thick, suggesting that finer silicious fossils had also been lost. 

Petrographic thin section photomicrographs. (1) Silicified tube examples (brighter white material) in transverse section (left) and longitudinal section (right). (2) Silicified funnel-in-funnel tube in longitudinal section, non-orthogonal to the length of the tube. Note blocky calcareous infilling and potential fine layering in the tube wall. (3) Transverse plane of non-silicified tube, with apparent fine layering and blocky calcareous infill. (4) Longitudinal plane of non-silicified tubular fossil with fine layering and micritic infill. Scale bars are 1 mm. Schiffbauer et al. (2024).

The calcitic tubes visible in the thin sections appeared to be made from a fine micrite, with courser carbonate and even dolomite crystals separating them. This could also be seen in scanning electron microscopy images, where it could also be seen that while the fine structures of the fossils were preserved, they were altered by the development of courser crystals around them, with many Cloudinomorph fossils having an elliptical cross-section (interpreted as distortion of an original circular shape), whole Sinotubulitids showed flattening, irregular cross-sections, and corrugation. One smooth-walled tube appears to have been helically twisted along its length. This makes it unlikely that the original surface structure of any of the fossils was preserved.

Surface and deformative features of silicified fossils (scanning electron microscope images). (1) Sagittally flattened Sinotubulitid specimen. (2) Imbricated funnel rims (dashed white lines to guide orientation) of cf. Saarina specimen with little-to-no flattening. (3) Torted funnel (left dashed curve), broken funnel wall (arrow), and intact funnel aperture (right dashed curve) of Cloudina sp. indet. specimen. (4) Ovoid puncture (arrow) in smooth (curved) tube. (5) Subcircular puncture (arrow) in Cloudina sp. indet. funnel (infilled). Scale bars are 1 mm. Schiffbauer et al. (2024).

Backscattered electron imaging and energy-dispersive X-ray spectroscope mapping of the thin sections suggested that there were many 'ghost tubes' present, which could not be visually observed, which were very nearly identical in composition to the host rock. There were detectable primarily by a lack of iron, an element present in the dolomite matrix. 

Scanning electron microscope imaging and energy-dispersive X-ray spectroscope elemental maps of fossils in polished slab. (1) Overview giga-macro photomosaic of a portion of polished thick section; labelled rectangles correspond to scanning electron microscope imaging and energy-dispersive X-ray spectroscope elemental maps image regions as indicated. (2), (3) Silicified fossil in transverse section: (2) backscattered electron (z-contrast) image, with (3) corresponding overlain elemental maps for calcium, silicon, and iron. (4), (5) Calcareous fossil in transverse section: (4) Backscattered electron (z-contrast) image, with (5) corresponding overlain elemental mabs for calcium, silicon, and iron. Scale bars are 5 mm (1), and 500 μm (2), (5). Schiffbauer et al. (2024).

The La Ciénega fauna was first described in 1985 by palaeontologist Mark McMenamin of Mount Hollyoak College, who assigned the fossils to a group of morphotypes rather than trying to assign them to taxa, and believed the sediments to be Early Cambrian in age, at least in part because PreCambrian fossils were thought to be extremely rare (if accepted at all) at this time. Subsequently, some of the fossils were identified as Sinotubulites, an exclusively PreCambrian taxa (the Ediacaran Period had not been named as such at this time), although this led to the postulation that this taxon extended into the Cambrian, as this was the data assigned to the La Ciénega Formation. It was not until the recognition of Cloudina, also exclusively PreCambrian, and later an index fossil for the Terminal Ediacaran, that the La Ciénega Formation was recognised as PreCambrian in origin, with geochemical dating methods later confirming an End Ediacaran age.

Schiffbauer et al. interpret the La Ciénega fauna as a multi-taxa, Terminal Ediacaran assemblage, including SinotubulitesCloudina, and other Cloudinomorphs, probably Saarina or Conotubus, as well as other, unidentified tubular fossils. The preservation present is a mixture of silicification, which produces fossils recoverable by acid etching, and calcification, which does not. Many of the silicified fossils show plastic deformation, which is taken to indicate that they were not silicified in life, but rather as the result of some taphonomic process. Examined in thin section, the calcified specimens appear to show finer organic structures, supporting this hypothesis. This means that identification of the fossils from the silicified material only is unreliable. However, the preservation of what appear to be drill holes in some of these fossils, and the fact that these drill holes only appear to be present in examples of Cloudina and not Sinotubulites is likely to be significant, as this repeats a pattern seen in deposits of a similar age in Shaanxi Province, China, increasing the possibility that this represents some form of early predator-prey interaction, with predators able to select certain tubes as suitable targets for predation.

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Thursday, 7 November 2024

Malaria in Ethiopia.

Between 1 January and 20 October 2024 more than 7.4 million cases of Malaria were reported in Ethiopia, with 1157 deaths recorded, a case fatality rate of 0.02%, according to a press release issued by the World Health Organization on 31 October 2024. On these infections, 95% were causes by Plasmodium falciparum. This is the highest number of cases reported in Ethiopia in seven years, and part of an ongoing rising trend of Plasmodium falciparum infections; in 2023, 4.21 million Malaria infections, with 527 deaths, with 70% caused by Plasmodium falciparum.

The overwhelming majority of cases occurred in the west of the country, with four regions accounting for 81% of all recorded infections and 89% of known deaths, with 44% of cases and 667 deaths in Oromo, 18% of cases and 56 deaths in Amhara, 12% of cases and 250 deaths in Southwest Ethiopia, and 7% of cases and 45 deaths in South Ethiopia. 

Geographical distribution of Malaria cases as of 20 October 2024. World Health Organization.

Of Ethiopia's 523 worodas (districts), 222 have been identified as having a high Malaria burden, together accounting for 75% of recorded Malaria cases in 2023. Fifty of these high-burden worodas are considered to be hard-to-access due to ongoing conflicts.

A slight majority of cases are males, who accounted for 56% of cases treated as outpatients and 52% of inpatient admissions. Children accounted for 16% of outpatients and 25% of inpatient admissions. This age and sex distribution is thought to be due to patterns of seasonal migration, with large numbers of adult male migrant workers seeking work in high-risk areas during the peak of the Malaria season. 

From 2000-onwards, Ethiopia had a steady reduction in the number of Malaria cases each year, driven by improved surveillance, roll-out of malaria interventions, and community health extension program. The number of cases fell to an all-time low in 2019, when only 900 000 cases were recorded, and there was no wide-ranging major epidemic, only sporadic local outbreaks. However, the country began to suffer a resurgence of the disease from 2021 onwards, with 1.3 million cases in 2021, 3.3 million cases in 2022, and 4.1 million cases in 2023. This return appears to have been driven by the Plasmodium falciparum strain of the disease, which caused 70% of the infections in 2023, and which appears to have become endemic in areas where it was not previously known.

Weekly trend of malaria cases in Ethiopia, 01 January 2021 to 13 October 2024. World Health Organization.

Malaria is caused by parasitic unicellular Eukaryotes of the genus Plasmodium, and affects a wide range of terrestrial Vertebrates. Five different species of Plasmodium can cause Malaria in Humans, with most infections caused by either Plasmodium falciparum or Plasmodium vivax, both of which are endemic to Ethiopia. The parasites are primarily spread via the bite of the female Anopheles Mosquitoes (males do not bite), but can also be spread through blood transfusions, organ transplants, or practices such as needle-sharing.

Photomicrograph of a blood smear containing a macro- and microgametocyte of the Plasmodium falciparum parasite. Both macro- and microgametocytes are products of the erythrocytic life cycle. Within a few minutes after the Anopheles sp. vector ingests the gametocytes, microgametocytes develop into microgametes, which are able to fertilize gametes. Centers for Disease Control and Prevention/Wikipedia Commons.

Malaria manifests with approximately 10-15 days after infection, as a fever, headache, and chills. Mild cases often pass soon, and can be difficult to identify as Malaria, however, more severe cases can be fatal in as little as 24 hours after the onset of symptoms. 

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Wednesday, 6 November 2024

Pothos deleonii: A new species of Arum from Mindanao Island.

Arums of the genus Pothos are hemiepiphytic vines (Plants which begin life as epiphytes growing upon other plants, but which as they grow stronger become self-supporting) found in tropical and subtropical forests in South China, Southeast Asia, Austrolasia, Oceana, and Madagascar. 

In a paper published in the journal PhytoKeys on 15 October 2024, Maria Melanie Medecilo-Guiang of the Center for Biodiversity Research and Extension in Mindanao and Plant Biology Division at Central Mindanao University, and Derek Cabactulan of Cagayan de Oro City, describe a new species of Pothos from Bukidnon Province on Mindanao Island, Philippines.

The new species was first noted as possibly significant on the basis of its remarkable inflorescence, by conservationist and eye surgeon Miguel De Leon at a Robert S. Kennedy Bird Conservancy site in Bukidnon Province during an ornithological expedition in 2019. A subsequent expedition to the same site in February 2024 collected samples of the plant, from which it has been confirmed to be a new species. This is named Pothos deleonii, in honour of the initial discoverer.

Pothos deleonii. (A) Habit with flowering branch, (B) leaf apex, (C) leaf base, (D) venation pattern, (E) inflorescence, (F( detail of spadix. Medecilo-Guiang & Cabactulan (2024).

Pothos deleonii is a root climbing, fibrous liana, with slender, slightly woody, green stems from which slender leaves arise on petioles (leaf stems) at regular intervals. Roots are found along the stem when the plants are young, but become less common as the Plant matures, and tend to be absent around inflorescence-producing termini. Inflorescences are born singularly on elongated peduncles (flower stalks) which hang 16-18 cm below the stem. These inflorescences are a dark wine red, aging to purplish black, with a spadix (spike with a large number of small flowers) up to 6.9 cm long, surrounded by a spathe (petal-like structure) up to 10 cm long and 5.5 cm wide.

Pothos deleonii was found growing at only two locations, climbing on the  base and trunks of Tree Ferns of the genus Alsophila, in an area of degraded secondary, open-canopy Dipterocarp forest, at altitudes of 1150 and 1270 m above sealevel. Once the vines reach about 4-6 m in height they become independent of their host, able to stand free, either on their own base or supported by the surrounding tree canopy. 

Both known sites are within a 5 km² area in the northern foothills of Mt. Kitanglad. This area is protected, and monitored by the Robert S. Kennedy Bird Conservancy, and not considered to be under any threat. However, on the basis of the low number of specimens discovered, and the limited area within which it is found, Medecilo-Guiang and Cabactulan recommend that Pothos deleonii is classified as Critically Endangered under the terms of the International Union for the Conservation of Nature's Red List of Threatened Species.

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Friday, 1 November 2024

Pheidole praehistorica: A new species of Spiny Ant from Oligo–Miocene Chiapas Amber.

The genus Pheidole is currently considered to be the most diverse genus of Ants, with 1160 living and six fossil species. Although global in distribution, the genus is at its most diverse in the Neotropics, and is presumed to have originated in this region. This is supported by the locations from which the known fossils in the genus have been recovered, with the oldest known species coming from the Eocene of Colorado, and other fossils known from the Miocene of the Dominican Republic (three species), and the Oligo-Miocene of Chiapas State, Mexico (2 species).

In a paper published in the European Journal of Taxonomy on 25 October 2024, Fernando Varela-Hernández & Franciso Riquelme of the Laboratorio de Sistemática Molecular at the Universidad Autónoma del Estado de Morelos, describe a third species of Pheidole from Chiapas Amber.

Chiapas Amber comes from the Simojovel, Totolapa, and Estrella de Belén localities in the Chiapas Highlands of southern Mexico, with the Simojovel site being the main centre of commercial amber extraction. The amber comes from a series of limestone, sandstone, siltstone, shale, and lignite beds of Late Oligocene to Early Miocene age, referred to as either the Simojovel Formation or the La Quinta Formation. The amber here is thought to have derived from a type of Leguminous tree of the genus Hymenaea; resin-producing trees belonging to this genus are also thought to have been responsible for Dominican Amber, which is of approximately the same age as Chiapas Amber, and are still found today across the Neotropics. 

The new species is named Pheidole praehistorica, where 'praehistorica' means 'prehistoric' in reference to the nature of the material from which it is described, five fossil Ants trapped within a single species of amber.

Pheidole praehistorica. (A)–(C) Holotype (CPAL.464). (A) Profile view. (B) Frontal view. (C) Closer lateral view of the head and mesosoma. (D) Paratype (CPAL.465), latero-frontal view of the head. (E) Paratype (CPAL.468), profile view. Abbreviations: acl, antennal club; an, antenna; cly, clypeus; ey, eyes; fl, foreleg; ga, gaster; ha, hairs on clypeus; hd, head; hl, hind  leg; mn,  mandible; nck, neck; p, petiole; pn, pronotum; pns, pronotal spine; pp, postpetiole; pps, propodeal spine; sc, scape. Varela-Hernández & Riquelme (2024).

Pheidole praehistorica is smaller than other species from Chiapas Amber, an average length of 2.3 mm, and has shorter pronotal spines (spines on the forward part of the thorax, immediately behind the head) and straight propodeal spines (spines on the rear part of the thorax, immediately before the abdomen. 

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