Showing posts with label Messel Shale. Show all posts
Showing posts with label Messel Shale. Show all posts

Sunday, 20 December 2020

Eoconstrictor fischeri: A Booid Snake from the Middle Eocene Messel Shale of Germany.

Snakes of the clade Boidae (Boas, Anacondas, Emerald Boas) are arguably among the most charismatic species of living Reptiles. They are one of the first o shoots of that part of the Snake tree that capture and ingest prey much larger than their own head through an arsenal of anatomical and behavioural features including constriction, macrostomy (the ability to greatly enlarge the mouth by dislocating the jaw), and infrared detection as an integral part of their visual system. Boid snakes, currently distributed in the Neotropics, are part of the larger clade Booidea (Neotropical Boas, 'Erycines', Malagasy Boas, Ungaliophiines and Pacific Island Boas), which has fuelled much debate as to how a Reptile group of such low apparent vagility came to be distributed across all current continents except Antarctica. Up to now, the fragmentary and questionable fossil record of Booid Snakes provides little insight into their early evolution and ecology.

The study of several exquisitely preserved skeletons of Booid Snakes from the Eocene Konservat-Lagerstätte of Messel (Germany) provides considerable new insight into the biology of early Boas. 

In a paper published in the journal Diversity on 13 March 2020, Agustín Scanferla of the Department of Messel Research and Mammalogy at the Senckenberg Research Institute, and the Instituto de Bio y Geociencias del NOA, and Krister Smith, also of the Department of Messel Research and Mammalogy at the Senckenberg Research Institute, and of the Institute for Ecology, Diversity and Evolution at the University of Frankfurt, describe the anatomy of this species based on computed tomography data sets and analyse its phylogenetic relationships. Scanferla and Smith then discuss its implications for Booid biogeography and the habitat preferences of this ancient boa. Finally, they present evidence for the early presence of specialised organs to detect infrared radiation and discuss its role in the ecological relations of this early Boid relative.

Scanfera and Smith employed a morphological matrix which they had previously developed and due to be published in the journal Geodiversitas. They added several terminals that represent all living genera and well-known fossil Booidea. The resulting matrix with 201 osteological characters and 48 terminals was analysed in combination with DNA sequences for three mitochondrial (12S, 16S, Cytb) and five nuclear genes (BDNF, Cmos, NTF3, NGFB and PNN), all taken from the GenBank. Scanfera and Smith employed static homology via multiple alignment using default settings in Clustal X. After alignment, each sequence was trimmed of its leading and lagging gaps. For maximum parsimony analyses Scanfera and Smith employed TNT. All characters were equally weighted and treated as unordered, and gaps coded as missing data. Trees were rooted utilising the Anguimorph Lizard Varanus salvator as an outgroup. The search strategy employed in TNT was 'Traditional search' (using TBR) with 1000 replications with the objective of encountering all possible tree islands. Two alternative support measures (Bremer support and bootstrap resampling) were calculated to evaluate the robustness of the nodes of the most parsimonious trees. Bootstrap values were calculated with 10 000 pseudoreplicates.

Scanfera and Smith furthermore conducted Bayesian inference using the fossilised birth-death process as implemented in Mr. Bayes 3.2.1. For fossil taxa, a uniform prior between an upper and lower bound corresponding to the age uncertainty was applied. The analysis was performed with four chains in two independent runs with 40 million generations and tree sampling at every 1000 generations. A 25% burn-in rate was applied. To estimate divergence times, we applied the a posteriori time-scaling method of David Bapst using the package 'paleotree' for R.

The area of foramina usually reflects the amount of tissue that passes through them. Accordingly, the size of the foramina in the jaws is related to the number of nerve fibres and size of blood vessels that serve the sensory tissue of heat-sensing circumoral epithelium in snakes. In the upper jaw this tissue is innervated by the maxillary and/or ophthalmic branch of the trigeminal, and perfused by branches of the superior maxillary artery, which pass through the maxillary labial foramina in Squamates. In the lower jaw, this tissue is innervated by the mandibular branch of the trigeminal, and perfused by branches of the mandibular artery, which pass through the mental and anterior surangular foramina in Snakes.

To determine whether pit organs were present in the Messel fossil Booids, Scanfera and Smith gathered information on the presence of pits for 27 extant species in five regions of the jaws: rostral, anterior supralabial, posterior supralabial, anterior infralabial, and posterior infralabial. They then measured the dorsoventral height of the foramina in the jaws. As suggested by Arnold Kluge, the height of foramina will not be a ected by the orientation of the foramina in the horizontal plane. Scanfera and Smith focused on Boas and Pythons because, in contrast to Viperidae, they retain a more plesiomorphic maxillary morphology. They also measured two Colubroids (Lampropeltis getulus and Thamnophis marcianus), which have previously been surveyed with regard to their sensitivity to radiant heat. Scanfera and Smith estimated the cross-sectional area of each foramen from its height and then summed those area values for all foramina in the maxilla and for both foramina in the dentary in order to estimate the total amount of neurovascular tissue related to the circumoral area of a jaw quadrant. While it should theoretically be possible to study the relation between foramen size and the presence of pit organs only in that part of the jaw innervated by the nerve, uncertainty and known variation in the innervation pattern led Scanfera and Smith to treat each jaw quadrate as a whole using the summed area. From the summed area, they then calculated the (1-dimensional) theoretical diameter of a single foramen for the upper and for the lower jaw that would have contained this tissue. Finally, they normalised this theoretical diameter by dividing it by the skull length, as measured from snout tip to the posterior end of the occipital condyle. Scanfera and Smith used a kind of generalised linear model, logistic regression, to model the correlation between theoretical, normalised foramen diameter and the presence of pits. Based on the model, they then calculated the probability that pits were present in the upper and lower jaws of the Messel fossil Snakes, given the theoretical, normalised diameter of the foramina in I (SMF-ME 11398), Messelophis variatus (SMF-ME 1828), Rieppelophis ermannorum (HLMD-Me 7915), and Rageryx schmidi (HLMD-Me 9723).

In extant Snakes, there is a correlation between body size and tail length, on the one hand, and habitat preferences. Coleman Sheehy, James Albert, and Harvey Lillywhite assigned all species in their data-set to one of four categories: aquatic, nonscansorial ('ground-dwelling' here), eurytopically arboreal/terrestrial ('generalist' here), and stenotopically arboreal ('arboreal' here). To explore the significance of these conclusions for the Messel fossil taxa, Scanfera and Smith took the dataset of Sheehy et al., added measurements on 9 species (for a total of 234 species) and used it to calculate snout-vent length. and absolute tail length. Scanfera and Smith also took estimates of these variables from othrt authors that have studied fossil Booids from the Messel Shale. They calculated the common logarithm of all measurements and conducted principle components analysis on the logged data. They also conducted phylogenetic principle components analysis on the logged data based the tree of Alexander Pyron, Frank Burbrink, and John Weins, tree. However, the results of phylogenetic principle components analysis were highly similar to those of the principle components analysis, so that individual extant species are in many cases readily identifiable in the two plots of principle components 1 and 2, so we do not believe that phylogenetic principle components analysis would produce diff erent results with respect to the fossils. For phylogenetic principle components analysis Scanfera and Smith made use of the function phyl.pca in the phytools package for R. Scanfera and Smith also conducted linear discriminant analysis on the logged data of extant species, as these were more closely normally distributed. They then used the linear discriminant analysis model to predict, with default assumptions, the habitat preferences of the Messel fossil taxa. All calculations were performed in R v.3.5.

Currently all larger Booid vertebrae from the early Palaeogene of Europe have been referred to species of the genera Palaeopython or Paleryx. However, ongoing revision of these genera based on the type material, including cranial elements, shows that 'Palaeopython' fischeri is not closely related to the type species of Palaeopython, Palaeopython cadurcensis, and lacks diagnostic features of the type species of Paleryx, Paleryx rhombifer. Thus, Scanfera and Smith consider that fischeri represents a distinct lineage and requires a new generic name. They therefore create a new genus, Eoconstrictor, where 'Eo' comes from Greek mythology, the goddess that brought the dawn to Earth every morning; 'constrictor' comes from Latin, meaning 'one who constricts'.

The holotype of Eoconstrictor fischeri is SMF-ME 929, seven mid-trunk vertebrae. Also refered to this species are a specimen with Crocodylian in gut (accessioned in the Fossilien- und Heimatmuseum Messel; no number); SMF-ME 1002, skeleton without skull; SMF-ME 2504, skeleton; SMF-ME 11332, skeleton with Lizard in stomach; SMF-ME 11398, skeleton. All known specimens come from the lacustrine 'oil-shale' of the Middle Messel Formation (early–middle Eocene, roughly 48 million years old) at Messel Pit, Germany.

These are medium-sized Boid Snakes, over 2 m in total length, di ffering from all other Snakes in having the following combination of derived features: edentulous premaxilla with bifid vomerine processes; maxilla bearing four labial foramina and 15–18 maxillary teeth; palatine with five teeth and a long maxillary process; 11 pterygoid teeth; dentary with 18–19 teeth; sharp sagittal keel along the basioccipital; the vertebral column with up to 369 vertebrae, of which up to 72 are postcloacal vertebrae.

Eoconstrictor fischeri was a medium- to large-sized Snake (total body length of adult individuals roughly 200 cm, tail length approximately 21 cm, similar to the extant Puerto Rican Boa, Chilabothrus inornatus. The general shape of the skull of Eoconstrictor is remarkably similar to that of Neotropical Boas, especially Boa constrictor.

 
Morphology of Eoconstrictor fischeri. (A) Compete skeleton, SMF-ME 11398; (B) 3D reconstruction based upon computed tomography data of the dorsal (left) and ventral (right) views of the skull of specimen SMF-ME 11398; (C) premaxilla in anterolateral view; (D) right maxilla in lateral view (arrows indicare labial foramina); (E) left palatine in ventral view; (F) left pterygoid and ectopterygoid in ventral view; (G) left prefrontal in dorsal view; (H) braincase in left lateral view. Abbreviations: adp, anterior dentiginous process; ap, ascending process; bo, basioccipital; c, coronoid; cb, compound bone; chp, choanal process; dk, dorsal keel; dl, dorsal lapet; ec, ectopterygoid; f, frontal; j, jugal; ll, lateral lamina; lfp, lateral foot process; mfp, medial foot process; mx, maxilla; mxp, maxillary process; n, nasal; np, nasal process; os, ophidiosphenoid; ot, otooccipital; p, parietal; pb-bs, parabasisphenoid; pf, prefrontal; pm, premaxilla; pot, prootic; q, quadrate; qr, quadrate ramus; sc, sagital crest; so, supraoccipital; st, supratemporal; tp, transverse process; V2, foramen for the maxillary branch of the trigeminal nerve; V3, foramen for the mandibular branch of the trigeminal nerve; vomerine process. Scanfera & Smith (2020).

The edentulous premaxilla bears a well-developed ascending process. The vomerine process is short and the posterior tip is bifid, a unique trait among Snakes. The vertical lamina of nasal bone has dorsal and ventral processes, which were in contact with the tip of the ascending process and the nasal process of the premaxilla, respectively. The profrontal bone exhibits both expanded lateral and dorsal laminae, as in most Booids. It retains only a posterior contact with the dorsal surface of the maxilla through a short, tongue-like labial foot process. The medial foot process is a remarkably long, finger-like structure, approaching the the size observed in Boines and 'Erycines'. Between these processes there is a deep notch for the lachrymal duct, which is open ventrally as in Booids. The maxilla bears 18 tooth positions. It resembles that of Boa constrictor in having the anterior maxillary teeth subequal in length to the posterior ones, in contrast to the exceptional long anterior teeth of arboreal Boids such as Corallus and Chilabothrus. Available specimens of Eoconstrictor invariably have four labial foramina of variable size located in the anterior half of the bone. As in Booids, the maxillary process of the palatine arises from the lateral side of the posterior end of the palatine. The maxillary branch of trigeminal nerve passes dorsally between the palatine and the prefrontal through a groove in the dorsolateral surface of the palatine. The medial edge of the quadrate ramus of the pterygoid crosses dorsally over to the lateral side, forming an oblique keel on the dorsal surface. The posterior tip of the ectopterygoid contacts a well-defined shallow concavity in the lateral surface of the pterygoid. The frontal exhibits an expanded supraorbital shelf, as is consistently present in Boines, 'Erycines' and Malagasy Boas, thus conferring a square shape to this bone in dorsal view. Dorsally the parietal bears a projecting sagittal crest, which forms an elongate, slender and pointed posterior process that almost totally conceals the sagittal crest of the supraoccipital. As in most Booids, the right posterior opening of the Vidian canal is much larger than the left. The prominent basipterygoid process exhibits an enlarged area for contact with the pterygoid. Both parabasisphenoid and basioccipital bones have sharp sagittal keels, occupying the posterior third and the entire length of their ventral surfaces, respectively.

Tridimentional reconstructions of the snout bones of Eoconstrictor fischeri (SMF ME 11398) based on HRXCT data. Premaxilla in dorsal (A), ventral (B), left lateral (C), anterior (D) and posterior (E) views; F, left septomaxilla in lateral view; right nasal in dorsal (G) and lateral (H) views; vomer in lateral (I) and medial (J) views; left prefrontal bone in dorsal (K), lateral (L) and posterior (M) views; left jugal bone in lateral (N) and dorsal (O) views; P, right supratemporal in dorsal (upper) and lateral (lower) views; Q, left quadrate in lateral (left) and posterior (right) views; lower jaw bones in lateral (R) and medial (s) views. a, facet for the frontal pillar; ad, facet for the ascending process; amf, anterior mylohyoid foramen; av, anteroventral process; av, facet for the nasal process; au, angular; c, coronoid; ca, facet for the prefrontal dorsal lappet; cb, compound bone; d, dentary; fc, facet for quadrate cephalic condyle; hl, horizontal lamina; la, dorsal lappet; ld, lachrymal duct; lf, lateral foot process; ll, anterior lateral lamina; ln, lateral vertical flange; mf, mental foramen; mfp, medial foot process; mg, Meckelian groove; np, nasal process; pc, prearticular crest; pd, posterior dentigerous process; pl, posterior (vertical) lamina; pmf, posterior mylohyoid foramen; s, splenial; sc, surangular crest; sf, anterior surangular foramen; shc, stylohial crest.tp, transverse process; vc, cupola; vn, foramina for the olfactory nerves; vp, vomerine process. Scanfera & Smith (2020).

According to both maximum parsimony and Bayesian inference Eoconstrictor fischeri is unambiguously deeply nested in a well-supported, monophyletic Booidea, in congruence with almost all recent phylogenies based on molecular and combined data. Booid synapomorphies include a long medial foot process of the prefrontal, the posterior placement of the maxillary process of the palatine and the large size of the right posterior aperture of the Vidian canal. Among the di erent clades that comprise Booidea, Scanfera and Smith's analyses posit Eoconstrictor fischeri close to Neotropical Noas, Boidae.

 
3D reconstructions of the palatomaxillary and braincase bones of Eoconstrictor fischeri (SMF ME 11398) based on HRXCT data. Right maxilla in ventral (A), dorsal (B), lateral (C) and medial (D) views; right ectopterygoid in dorsal (E), ventral (F) and medial (G) views; left palatine in dorsal (H,J) and ventral (I,K) views; left pterygoid in ventral (L), dorsal (M), medial (N) and lateral (O) views; floor of the basicranium in anterodorsal view (P); braincase in posterolateral view (Q); braincase in ventral (R), dorsal (S), and left lateral (T) views; U, parabasisphenoid bone in dorsal (left) and ventral (right) views. adp, anterior dentigerous process; af, anterior medial foramina; av, anterior aperture of Vidian canal; bp, basipterygoid process; bo, basioccipital; cc, cerebral carotid; chp; choanal process; ci, crista interfenestralis; ct, crista trabecularis; ctu, crista tuberalis; dk, dorsal keel; ds, dorsum sellae; ec, ectopterygoid facet; gr, groove for the passage of the maxillary branch of trigeminal nerve; jf, jugular foramen; k, medial keel of the pterygoid facet; mxp, maxillary process; of, optic foramen; os, ophidiosphenoid; ot, otooccipital; p, parietal; pap, palatine process; pb, area of contact with the basipterygoid process; pb, parabasisphenoid; pot, prootic; pp, vestigial paraoccipital process; pr, parasphenoid rostrum; pv, posterior aperture of the Vidian canal; qr, quadrate ramus; s, stapes; saf, foramen for the superior alveolar nerve; sc, sagittal crest; so, supraoccipital; st, sella turcica; v2, foramen for the maxillary ramus of the trigeminal nerve; v3, foramen for the mandibular ramus of the trigeminal nerve. Scanfera & Smith (2020).

The traditional 'Erycine' group is inferred to be polyphyletic, in line with most recent phylogenies. The recently described small Booid Rageryx schmidi, also from Messel, forms a distinct, well-supported clade together with North American 'Erycines' Lichanura and Charina, thus excluding New World 'Erycines'. Interestingly, maximum parsimony also reveals a close anity of the other small Messel Booids Messelophis and Rieppelophis to North-Central American Ungaliophiine Boas.

 
Phylogenetic relationships of Eoconstrictor fischeri and biogeography of Booid Snakes. (A) Simplified, temporally calibrated tree of Booid Snakes; (B) Current distribution of species of the clade Booidea; (C) Palaeogeographic map depicting hyperthetical dispersal routes of Boine Snakes during the Middle Eocene. Scanfera & Smith (2020).

These phylogenetic results add at first sight a further complication to the Booid biogeographic puzzle, since the affinities of Eoconstrictor fischeri with Neotropical Boas necessarily imply an interchange route between Europe and South America. In agreement with previous estimations based on molecular analyses. Scanfera and Smith's time-calibrated trees indicate that major cladogenetic events for Booidea, including the origin of Neotropical Boas, occurred during the Palaeocene–Eocene.

Booids and Pythons display several pits with di erent arrangements in rostral and labial scales. Boas in particular display only labial pits, which are located at the cuadal margin of the labial scales, more precisely in the interstitial skin between contiguous scales. Heat receptors located in the fundus of pit organs are innervated by different branches of the trigemenal nerve, depending on their location, and are profusely irrigated by a capillary network supplied by arteries ultimately derived from the internal corotid. These nerves and blood vessels pierce the jaw bones (maxilla, compound bone, and dentary), enabling their cross-sectional area to be studied. Although a complete picture of the heat reception and pit organs is far from being achieved, it is known that jaw formina are clearly enlarged in species of Boas and Pythons with pit organs compared to species without them. Since neurogenetic structures have morphogenetic primacy, Scanfera and Smith assume that the size of the jaw foramina is proportional to the cross-sectional area of the neurovascular tissues that supply the receptors in pit organs.

 
Infrared pit organs in Eoconstrictor fischeri and its habitat preferences. (A) Head of the Rainbow Boa, Epicrates cenchria, in anterolateral view showing the pit organs located in supralabials and infralabial scales; (B) 3D reconstruction based on computed tomography data of the skull of Epicrates cenchria, with nervous (green) and blood (red) main supplies for pit organs from the foramina located in the maxila and lower jaw; (C) dorsolateral view of the right maxilla of Eoconstrictor fischeri (SME-MW 1002) showing labial foramina (yellow arrows); (D) relationship between the incidence of pit organs in the upper jaw and normalised total diameter of the maxilary foramina. Fossil taxa from Messel shown as vertical lines for the appropriate foramen size; (E) graph of the two pricipal components, with ecological classes and fossil taxa distinguished. Abbreviations: asf, anterior surangular foramen; lf, labial foramina; Lt, Lichamura trivirgata; mf, mental foramen. Scanfera & Smith (2020).

In their training data set Scanfera and Smith found a highly significant correlation between the size of maxillary labial foramina and the incidence of pit organs in the upper jaw, and between the size of the lower jaw foramina and the incidence of pit organs in the lower jaw. Applying the logistic model to the size of the foramina in Eoconstrictor, Scanfera and Smith calculate a high probability that Eoconstrictor had pit organs in the upper jaw but not in the lower jaw. Conversely, their model provides no support for the presence of pit organs in the coeval, small-sized Booid species of Messel.

Neotropical Boas inhabbit a wide range of habitats, including forests of various kinds, shrublands and savannas. Accordingly, these Snakes display diverse macrohabitat preferences, including generalist (Boa spp., Epicrates spp.), aquatic (Eunectes spp.) and arboreal forms (Corallus spp., Chilabothrus spp.). Previous studies based on ecomorphological traits of extant Boids have suggested that amcestral forms of this clade were stout, medium to large-sized Snakes with a short tail and occupied semi-arboreal to arboreal macrohabitats. Arboreal Boids are small to medium size forms and exhibit laterally compressed light bodies, all features that can be inferred from osteology.

According to Scanfera and Smith's multivariate statistical analyses, probabilities of group membership of Eoconstrictor fischeri are: generalist (61.7%), ground-dwelling (18.1%), arboreal (14.9%) and aquatic (5.2%). In other words, the probabitily that Eoconstrictor spent considerable time on the ground (was not arboreal or aquatic) is around 79.8%. The generalised anatomy observed in the skeleton of Eoconstrictor is in agreement with this result. The small Messel Booids Rieppelophis ermannorum and Rageryx schmidi are infered to be ground-dwelling forms (83% and 91% respectively), and these taxa also show skeletal traits consistent with this inference. Messelophis variatus, in contrast, plots in a part of the principal component-space distinct from the others. It is intermediate in size between Eoconstictor and the other two species. It also has a much longer tail (at least 26% of snout-vent length in HLMD-Me 15013, where some probably small part of the tail is also missing), although not as long as in many arboreal species, where relative tail length exceeds 30%. Its body is long due to the high number of vertebrae (about 300 trunk vertebrae) but threadlike. Linear discriminant analysis produces no single compelling hypothesis as to its macrohabitat preference: arboreal (29%), generalist (38%) or ground-dwelling (31%). As relative tail length rises, so will the probability that Messelophis was arboreal in habits.

The quantitative analysis of biogeographic history has advanced tremendously in recent years. However, these methods are yet of little use in studying the history of Booids, because Messel is, in a sense, the only Booid snake assemblage. To be sure, a large number of fossil Booid snake taxa have been described from the Palaeogene of Europe and North America and to a lesser extent Africa and South America. However, almost all of these taxa are based exclusively on isolated (frequently mid-trunk) vertebrae, and their phylogenetic anities are therefore virtually unconstrained. To exemplify the problems of phylogenetic interpretation, Krister Smith previously studied associated cranial elements and extensive sampling of the entire vertebral column in two late Eocene species from North America, previously considered to pertain potentially to the same genus of ‘Erycine’ Booid. He showed that these species not only are not ‘Erycines’, but they are not even closely related to one another. One, Calamagras weigeli, is apparently related to the Dwarf Boa clade Ungaliophiinae, whereas the other, Ogmophis compactus, is apparently related to the Mexican Burrowing Python, Loxocemus bicolor. Since several Booid lineages (total clades of Ungaliophiinae, Charininae, Boidae) have their oldest, or near-oldest (if Titanoboa is a stem Boid), records in Messel, this leads to the appearance that they originated in Europe and dispersed to the NewWorld (or beyond), rather than the other way around. Given the total absence of evidence from North America, and Africa however, this cannot be accepted at face value.

Several of the Messel Booid lineages are estimated to have diverged from extant Snakes near the Palaeocene–Eocene boundary, coincident with the prolonged period of global warming and hyperthermals around the Palaeocene–Eocene boundary. Range expansion, as inferred for a number of Lizard taxa in North America, could have promoted diversification, especially if accompanied by colonisation of Europe. Regardless, we consider it most probable that Booidea originated in the New World, where the centre of species diversity still lies, and dispersed to Europe, producing the lineages at Messel. Testing that hypothesis will require the discovery of well-preserved early Palaeogene fossils from the NewWorld. The locality of Fossil Lake as well as rare, associated material from other sites indicate that this is possible.

Assuming the total clade of Boidae itself has a South American origin, it remains to be established by what route Eoconstrictor arrived in Europe. Taking into account the long-term isolation of South America from the Upper Cretaceous to the Neogene, two alternative dispersal scenarios can explain our results. A South America-to-Europe dispersal route through Africa, which necessarily entails a transatlantic dispersal, was postulated by various researchers from the Late Cretaceous to the Palaeogene. The other possibility is a South America-to-Europe route via North America, which is supported by compelling evidence about the faunal dispersal route between North America and Europe during the Palaeogene. The lack of fossils from Africa and North America with known phylogenetic relations does not allow us to discriminate between these possibilities at present.

Labial pits are one of the most distinctive features of Booid and Pythonid snakes, for these organs, together with the facial pits of Crotaline Vipers, make them capable of perceiving infrared radiation, uniquely among Vertebrates. The photons coming from the environment of an animal are a mix of reflected photons, typically in the ultraviolet and visible spectrum, and photons emitted as blackbody radiation, typically in the infrared. Organs for infrared reception therefore give access to a completely new visual field representing the thermal environment.

The circumoral scales of all examined Booids and Pythons exhibit specialised receptors called terminal nerve masses. Each is the expanded, pyramidal terminus, with abundant mitochondria, of the larger branch of the axon of a pseudobipolar neuron whose soma is located in either the ophthalmic or the maxillomandibular ganglion of the trigeminal nerve. The other branch of the axon of this neuron projects to a specialized part of the myelencephalon called the lateral descending tract and nucleus of the trigeminal nerve. From there, signals are passed via relays to the optic tectum of the contralateral side (similar to visual signals from the lateral eyes), where they map spatiotopically with signals from the lateral eyes onto the tectal surface. It is therefore believed that visible light and infrared radiation are integrated into a single ‘broadband’ image of the environment.

The receptors are exceedingly sensitive, with a rise in temperature of 0.003°C or less capable of producing a signal (modulating the background firing of the neurons). The rich capillary beds of the pit organs are thought to help cool the terminal nerve masses rapidly and avoid ‘afterimages’. Terminal nerve masses have been documented, and may occur in a concentrated fashion, in the circumoral epithelium of Booid species that do not exhibit labial pits, such as Boa constrictor and Eunectes murinus. Indeed, their occurrence is surely responsible for the ability of Booids lacking pits, such as the aforementioned species and Lichanura trivirgata, to perceive radiant energy. Crucially, however, in pit organs the nerve supply is greater, the receptors more abundant, the capillary network denser, and the epidermis thinner than in surrounding areas. This is the basis for the correlation we found above between the size of jaw foramina (which carry the branches of the trigeminal nerve as well as the blood supply) and the incidence of pits.

Because the radiant heat receptors and the lateral descending tract and nucleus of the trigeminal nerve are unique to snakes capable of perceiving radiant energy and are present even in species of Booidea lacking pit organs, it is likely that this system was minimally present in the common ancestor of Booidea (and for similar reasons that of Pythonidae). Whether this system is present also in more basally branching taxa such as Xenopeltis and Loxocemus, much less other Alethinophidian Snakes, has yet to be examined. While the ability to sense radiant energy may by itself be advantageous, pits o er further advantages. First, the much greater density of receptors in the fundus (base) of the pit confers greater sensitivity. Second, because the orifice is always narrower than the fundus, it becomes possible to perceive also directionality and movement. Yet the distribution of labial pits in Booidea, especially their absence in Boa and Eunectes, together with the great variability in the number, location and shape of these pits, has suggested that they may have arisen multiple times even in this clade

Fossil evidence bearing on the problem has until now been wanting. The inferred presence of labial pits in Eoconstrictor fischeri therefore gives new insight into their pattern of evolution. First, it shows that a species close to the ancestor of crown Boidae possessed labial pits, making it possible that their absence in extant taxa like Boa and Eunectes represents loss. This would turn the evolutionary question on its head. Second, it shows that the first documented labial pits are located in the upper jaw, rather than in the lower jaw or both simultaneously. Finally, it shows that labial pits evolved very early (in a temporal sense) in the history of Booidea, so that they may have played a larger role in the diversification of the group than hitherto suspected. Until now the timing of their origin has been little constrained.

It is considered that pit organs may confer a selective advantage for diff erent reasons, which may diff er depending on the habitat, among other factors. Better visual discrimination of prey has featured most prominently in functional studies. Clearly, for predators on homeothermic prey (such as Mammals or Birds) this may be especially important, particularly so if the predator is nocturnal, as may be inferred for Eoconstrictor given the analyses of Allison Hsiang, Daniel Field, Timothy Webster, Adam Behlke, Matthew Davis, Rachel Racicot, and Jacques Gauthier. At the same time, it has been demonstrated experimentally that visible light, as opposed to infrared, modalities may dominate in directing prey strikes, and it is likely that both modalities are often used simultaneously. Other potential selective advantages have received less attention. These include predator avoidance, thermal microhabitat discrimination, and even the selection of ambush sites. In the latter case, it was considered that the relatively cool background of arboreal perches may assist in the discrimination of flying, homeothermic prey. 

As the earliest Booid Snake in which pit organs have been documented, Eoconstrictor fischeri illuminates the context in which they arose. The use of pit organs in the detection of homeothermic prey would be a potential function in Eoconstrictor, but available dietary data are inconsistent with that assumption. The large specimen described by Harry Greene, which in fact appears to be Eoconstrictor, has a Crocodylian, probably Diplocynodon sp. based on size, in its stomach. (Coils of vertebrae cover the head and tail, so that distinguishing characteristics of the two species cannot be studied. Furthermore, the plate on which it is conserved is impregnated with fibreglass, so that even high-resolution X-radiographs yielded no insight.) A juvenile Eoconstrictor had consumed a Basilisk Lizard, Geiseltaliellus maarius. A specimen of a small Mammalian Carnivore and a Bird were suggested to have been regurgitated by a large Constrictor, but in light of the recognition of a greater diversity of constrictors at Messel, it is unclear to which species these specimens should be attributed. Thus, available direct evidence suggests that poikilotherms were important in the diet of Eoconstrictor, despite the availability of abundant homeothermic species of appropriate size, such as Lipotyphlan Mammals and Flightless Birds. Given the extensive behavioural adaptations to maintain a constant activity temperature, it is not out of the question that pit organs are also useful in targeting other poikilothermic amniotes as well. However, Eoconstrictor does not support the hypothesis that the earliest pit organs were exclusively used to catch homeothermic prey.

The detection and avoidance or deterrence of homeothermic predators is also not supported. Messel is unusual in that large, homeothermic predators are absent from the assemblage. While this absence might partly reflect a taphonomic filter, it should be noted that large herbivores, especially basal Perissodactyls, are abundant Furthermore, Gerald Mayr summarised a rich assemblage of Flightless Birds at Messel, a fact he attributed to an original absence of large terrestrial predators there. Thus, there is no evidence that the labial pits of Eoconstrictor played a role in the detection or deterrence of homeothermic predators.

Finally, the use of pit organs in arboreal ambush sites is theoretically possible. Flying, homeothermic vertebrates, especially Bats, were abundant at Palaeolake Messel. However, Scanfera and Smith's analysis of habitat preferences suggests a terrestrial way of life, not stenotopically arboreal. Thus, there is no reason to believe that the upper pit organs of Eoconstrictor were useful in finding such sites (if this were possible) or catching prey at them. In sum, there is no evidence that the pit organs of Eoconstrictor played a role in predator–prey relations.

As emphasised by several previous works, the ability to sense radiant energy may play many other, less spectacular roles in the life of a Snake, and Eoconstrictor suggests that it is amongst this panoply of possibilities that the functional origin of pit organs within Booidea is to be sought, like, perhaps, the origin of infrared detection itself. At the same time, the advantages noted above that are conferred by pit organs in comparison with mere infrared receptors, the ability to perceive directionality and movement, highlight a conundrum. If Eoconstrictor did not specialise on homeothermic prey and had no need to avoid large homeothermic predators, then pit organs of the modern type would seem overbuilt. Thus, the limits of Scanfera and Smith's conclusions with regard to the pit organs of Eoconstrictor should be emphasised. The high density of infrared receptors (terminal nerve masses) and vascularisation suggested by Scanfera and Smith's results, which today are uniquely found in pit organs, say nothing about the morphology of those organs. In particular, the soft tissue surrounding the inferred concentrations of receptors is unconstrained, and Scanfera and Smith do not know the form of the orifice (aperture). In consequence, the extent to which Eoconstrictor could discriminate directionality and movement is unknown. Finally, Scanfera and Smith emphasise again that the number of specimens in which gut contents are preserved is low.

Amongst extant Booids (as well as Pythons), it is only medium to large-sized species that bear conspicuous pit organs, and they all occupy terrestrial habitats and frequently consume large endothermic prey such as Mammals and Birds. As Scanfera and Smith's results showed that small Booid species from Messel lacked pit organs, they support the existence of a common pattern since the earliest evolutionary history of this clade: pits only occur in larger species. If so, there may exist a noteworthy correlation between size, habitat use and diet that influenced (and still influences) the evolution of pit organs in Booid Snakes.

Further questions about the origin of the pit organs remain unanswered, such as the importance of their distribution in the circumoral area. Eoconstrictor apparently only had pit organs in the upper jaws, as in extant Morelia viridis, whereas other extant species, such as Antaresia childreni, only have them in the lower jaws. What di erent roles the exact distribution, not to mention the shape and number, of pit organs might serve in Boas and Pythons remain unknown.

Although the ecomorphology of Eoconstrictor could be taken as ancestral for Boidae, caution is yet warranted, given the scant knowledge about other fossil boids. Indeed, if Boid affinities and piscivorous feeding ecology of the giant aquatic Snake Titanoboa cerrejonensis from the Palaeocene of Colombia are confirmed, the ecomorphology and habitat preferences of early Boas must have been more diverse than previously thought.

The Messel Snake assemblage can be seen as the only Palaeogene snake assemblage in the sense that only in Messel can the phylogenetic relations of the component species be studied in detail. As such, it adds significantly to the morphological diversity and palaeobiology of the earliest Booids. Scanfera and Smith's phylogenetic results reinforce the diversity of booid lineages that inhabited the vicinity of Palaeolake Messel, and the extant relatives of the Messel taxa are noteworthy for being found exclusively in the New World. Messel preserves a diverse snake fauna in the early stages of its evolution, with diff erent ecomorphs occupying di erent macrohabitats. The presence of pit organs in Eoconstrictor furthermore complements other information on diet in this species and suggests that neither predator–prey relations nor the use of arboreal ambush sites were prominent at the origin of these unique sensory organs. Rather, the origin may lie in the broader life of the species.

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Thursday, 15 October 2015

A preserved Horse-foetus from the Middle Eocene Messel Shale.


Mammals have dominated almost all terrestrial ecosystems for the last 65 million years, however fossil Mammals, while not uncommon, are generally somewhat fragmentary, typically consisting of bone fragments and teeth, with larger more intact skeletons forming less than 2% of all know Mammal remains, and the preservation of other tissues even rarer. One location that does frequently produce more intact Mammal specimens is the early Middle Eocene Messel Shale of southern Germany, where a large number of Mammal specimens show exceptional preservation. Among the many remarkable fossils from the Messel Shale have been found a large number of specimens of the early Horse, Eurohippus messelensis, including a total of thirteen described examples of female Horses with preserved foetuses within their body cavities.

In a paper published in the journal PLoS One on 7 October 2015, Jens Lorenz Franzen of the Department Messelforschung at the Senckenberg Forschungsinstitut Frankfurt and the Department Geowissenschaften at the Naturhistorisches Museum Basel, Christine Aurich of the Department Universitätsklinik für Kleintiere und Pferde at the Veterinärmedizinische Universität Wien and Jörg Habersetzer, also of the Department Messelforschung at the Senckenberg Forschungsinstitut Frankfurt, describe a new specimen of Eurohippus messelensis, also showing the presence of a preserved foetus.

Skeleton of a mare of Eurohippus messelensis with foetus (white ellipse). The specimen was discovered and excavated by a team of the Senckenberg Research Institute Frankfurt at the Grube Messel, shoulder height ca. 30 cm, scale = 10 cm. Sven Tränkner in Franzen et al. (2015).

The new specimen is about 2 million years older than any previously described example, but is nevertheless considered to be the best preserved. It comprises a partially disarticulated post-cranial skeleton and crushed and disarticulated cranium, encased within what appears to be the preserved uterus of the adult, only the second such specimen to preserve traces of the adult reproductive tract as well as the more obvious bones of the foetus.

The foetus analyzed in detail by high-resolution micro-x-ray. Bones of the mare are indicated by black lettering, bones and teeth of the foetus by white lettering. L2-7 = lumbar vertebrae 2–7 of the mare. Scale = 10 cm. Jens Lorenz Franzen & Jörg Habersetzer in Franzen et al. (2015).

The reproductive biology of extinct animals is notoriously hard to interpret. In Mammals length of gestation is more closely tied to size than to phylogeny, however this is still only a rough guide, for example modern Horses carry their foals for about eleven months, compared to about nine months for Cows, which are approximately the same size. The modern Blue Duiker, Philantomba monticola, a small Antelope from the rainforests of Central and Southern Africa, is generally considered an approximate ecological equivalent for Eurohippus messelensis, being approximately the same size and living in a similar environment, and typically carry their young for between 201 and 213 days, giving birth to one offspring per year. The high proportion of pregnant female Eurohippus messelensis recovered from the Messel Shale suggests a similar lifestyle, with females pregnant for much of the time, but only carrying one foal per year.

Identification of the broad ligament (ligamentumlatum uteri). (a) The broad ligament in the fossil mare from the Grube Messel. Sacrum and lumbar vertebrae (L6-7) belong to the mare. Not to scale(b) Position and morphology of the broad ligament (ligamentum latum uteri) attaching the uterine horn containing the fetus to the lumbar vertebrae and the pelvis of a modern horse. Jörg Habersetzer in Franzen et al. (2015).

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Sunday, 8 June 2014

A flower-visiting Bird from the Middle Eocene Messel Shale of Germany.

Several groups of modern Birds are known to feed by visiting flowers to collect nectar, and in the process serve as pollinators for the plants. Most notable are the Hummingbirds of the Americas, but Sunbirds, Flowerpeckers, Honeycreepers, Honeyeaters, Lorikeets and Hanging Parrots all feed partially or completely from flowers. Identifying such behavior in the fossil record is difficult. Many insect groups known to be exclusively flower feeders appear in the Cretaceous as the Flowering Plants radiated and came to dominate floral communities, and are presumed to have began flower feeding at the same time. This is supported by several cases of Insects preserved in amber with pollen on their bodies. With Birds amber does not help, as no known Birds have ever been found preserved in amber, and all are probably to large to be trapped in this way. The oldest fossil birds that can be confidently identified as flower feeders are Hummingbirds from the Early Oligocene of Europe, which resemble modern forms closely enough that we presume they had similar behavior.

In a paper published in the journal Biology Letters on 28 May 2014, Gerald Mayr  and Volker Wilde of the Senckenberg Research Institute and Natural History Museum describe a fossil Bird from the Middle Eocene Messel Shale of Germany, preserved with stomach contents intact, which appears to have been consuming a diet of pollen and (by inference) nectar.

The Bird belongs to the species Pumiliornis tessellatus, which has been described previously from two other specimens, also from the Messel Shale. The affinities of Pumiliornis tessellatus are uncertain. It has been suggested that it is related to either Parrots or Cuckoos, and it probably has no living descendants. Flower feeding is not a total surprise for this species, as it has a long probing beak similar to that of a Sunbird or Hummingbird (although such beaks can also be an adaptation to insectivory).

Skeleton of Pumiliornis tessellatus from the Middle Eocene of Messel with preserved stomach contents. (a) Overview of specimen, framed area indicates position of detail shown in (b). Mayr & Wild (2014).

(b) Stomach contents of Pumiliornis tessellatusMayr & Wild (2014).


The nature of the pollen within the stomach of the Bird was not identifiable. This is not altogether surprising, as while pollen has a long and well studied fossil record, this is almost entirely of wind-blown pollen, which relies on high levels of production by the plant, and by its very nature tends to be scattered widely in its environment, while plants using animal pollinators can produce much less pollen, and do not typically scatter it at all.

Details of pollen preserved in the stomach contents of Pumiliornis tessellatus. (a) UV-induced fluorescence stereomicrographs of main area with pollen and (b,c) selected pollen grains; framed areas in (a) indicate the position of the details in (b,c); the arrows in (b) point to the three colpi. SEM pictures of individual pollen grains; panel (d ) is from a sample taken before preparation, and panels (e,f ) are unsputtered details of the fossil slab. Except for the small pollen in (f ), all pollen is of the large type. Mayr & Wild (2014).


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Despite their very different lifestyles the Swifts (Apodidae) and Hummingbirds (Trochilidae) are thought to be closely related groups, placed within a single combined group, the Pan-Apodiformes, along with the Swift-like Tree Swifts (Hemiprocnidae). As a group the Pan-Apodiformes are thought to be most closely related to Nightjars...




Passerines (Perching Birds) are the most numerous and successful group of Birds in the modern world, with over half of all known Bird species being Passerines, including Finches, Thrushes, Sparrows, Warblers and Crows. Despite their success the group do not have an extensive fossil record, largely due to their small and delicate bones. The oldest putative Passerine fossils are from the early Eocene of Australia.



Kiwi (the term is Māori and can be plural or singular without modification) are small Ratite Birds from New Zealand, considered to be evolutionarily convergent with small Mammals due to their fur-like feathers, burrowing, nocturnal lifestyle and scent-led foraging...




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Tuesday, 13 March 2012

Evidence of fungal parasites modifying the behavior of ants from the Eocene Messel Shale.

Fungal parasites often manipulate the behavior of insects in a variety of ways, but in particular by causing insects to move to a location beneficial to the fungi prior to death. One notable example of this is the fungus Ophiocordyceps unilateralis from Southeast Asia, which causes Carpenter Ants to leave their home in the tree canopy and bite into the leaf veins of leaves in the forest understory before lying. This is a cooler, moister environment than the canopy, an ideal place for the fungus to hatch its spores.

In a paper in the journal Biology Letters David Hughes of the Department of Organismic and Evolutionary Biology at Harvard University, School of Biosciences at the University of Exeter and the Department of Entomology at Penn State University, Torsten Wappler of the Steinmann Institute at the University of Bonn, and Conrad Labandeira of the Department of Paleobiology at the National Museum of Natural History at the Smithsonian Institution, and the Department of Entomology at the University of Maryland discuss an example of leaf damage from the Eocene Messel Shale in Germany apparently caused by behavior similar to that seen in ants targeted by Ophiocordyceps unilateralis.

(a) Leaf from the Messel Shale with 29 marks interpreted as death-grip scars by fungus infected ants. (b) Drawing showing detail of (a). (c) Photograph showing detail of (b) showing a single grip-mark. (d) Another grip mark. (e) Detail of (a) showing (L) unaffected leaf tissue, (H) hyperplasic cell files on a callused area, (S) area of fungal infection, (C) cut area. (f) Modern Carpenter Ant, infected with Ophiocordyceps unilateralis in death grip. (g) Death grip scar on modern leaf. (h) Drawing of modern leaf with death grip scars. (i) Photograph of same leaf as in (h).

The earliest known example of a fossil insect with a parasitic fungal infection is from a scale insect in 105 million year old (Cretaceous) amber from Burma; a 21 million year old (Miocene) termite with a similar infection is known from amber from the Dominican Republic, but neither show whether the fungus was capable of modifying the behavior of the insects. Modern Ophiocordyceps fungi only infect ants belonging to the tribe Camponotini, which are not known from the Messel Shale, but are known from Eocene amber from Germany and the Ukraine.

The Messel Shale fossils originate from a (now disused) quarry in southwestern Germany, about 35 km southeast of Frankfurt. The quarry produced bituminous shale which is noted for a large variety of well preserved Eocene fossils (about 47 million years old), particularly birds, mammals, insects and plants. At the time of formation the site was a lake with a stagnant anoxic bottom, into which the bodies of animals could sink and become preserved, often in excellent detail, with soft tissues not actually preserved but mapped by the bacterial films that covered them. It is thought that the lake may have periodically released toxic gas in a similar way to modern Lake Nyos in Cameroon, due to the large number of apparently intact bird and bat fossils found in the deposits. The ecology and climate of the site is considered to have been roughly analogous to that of modern Thailand.

The geological setting of the Messel Pit. From Lenz, Wilde & Riegel (2007).

The site was nearly used for landfill after quarrying ended in the 1970s, but fortunately was eventually preserved. It is now a UNESCO World Heritage Site.