Monday, 19 December 2022

Using strontium isotope ratios to determine the origin of textiles from archaeological sites in Nubia.

The manufacture of textiles by pre-industrial societies was typically a demanding, multi-stage process, which involved obtaining fibres from an Animal or Plant, spinning it into a thread, and weaving it into a cloth, with dyes potentially being added at different stages to achieve colours or patterns. As such, textiles from archaeological sites can be important sources of information about the societies that produced them, giving evidence about trade routes and manufacturing techniques, as well as the social status, gender and age of the wearer. 

Textiles from archaeological sites in Sudan have been studied since the early twentieth century, with material recovered from many sites in the mid Nile Valley. Wool and cotton are the most common fibres in these archaeological assemblages. Linen is also present, but in much lower quantities. Silk has never been produced in Sudan, so any silk discovered there can automatically be assumed to have been imported. Spinning of threads in Sudan was almost exclusively done in the S-direction (anticlockwise), while woven cloths were usually plain tabbies (a plain weave, with warp and weft threads crossing at right angles to form a criss-cross pattern) or weft-facing tabbies (cloths in which the warp is covered up by multiple, complimentary weft layers, enabling the building up of a pattern, which is typically angular in nature), often having bands or stripes in different shades.

However, determining the origin of fabrics from archaeological sites is complex, as plain and weft-facing tabbies are widely manufactured, and the textiles recovered from archaeological sites are typically very fragmentary. Even spinning direction is of limited use, as even in areas where the majority of spinning is done in one direction, the presence of local communities or even individual spinners doing the opposite cannot be excluded.

In a paper published in the Journal of African Archaeology on 11 August 2022, Magdalena Wozniak of the Department of African Studies at the University of Warsaw, and Zdzislaw Belka of the Isotope Research Unit at Adam Mickiewicz University, present the results of a study which used strontium isotope ratios to determine the origin of cotton and wool fragments from Late Antiquity and the Early Medieval Period recovered from archaeological sites in the Middle Nile Valley.

Strontium isotope ratios in water are strongly linked to local geology, and can be preserved in the tissues of Animals and Plants, making them a powerful tool in archaeology. Strontium isotopes have been used to track the movements of ancient Human and Animal groups, as well as tracing ancient trade routes by determining the origin of stone tools, glass, and textiles. This technique requires an understanding of the ratio of the isotopes strontium⁸⁷ and strontium⁸⁶ in the geology of the area, both locally and regionally. Armed with this it is possible to determine whether or not a material (in this case fabric) was manufactured locally, and in some cases where a non-local item originated from. Both Animals and Plants (the producers of wool and cotton) take up strontium from the environment in the ratios at which they are present, without any fractionation, with the strontium isotope ratios found in their tissues reflecting a mixture of that found in the bedrock and overlying soil as well as that from ground and surface water. However, the different ecologies of Animals and Plants mean that even when they live in the same area, they will have slightly different isotopic ratios.

Although obtaining an accurate strontium isotope ratio only requires about 100-150 mg of material, the desiccated and friable nature of most archaeological fabrics means that the process typically leads to the destruction of one or two square centimetres of fabric, so the choice of materials sacrificed must be made very carefully.

Wozniak and Belka used four textile samples from recent excavations near the fourth cataract, made available for the study by the Polish Academy of Sciences, as well as three samples provided by the Sudan National Museum and the National Corporation for Antiquities and Museums in Khartoum. All bar one of these was from a burial site, and all are of either wool or cotton. The sample was chosen to include samples which were presumed to be of both local manufacture and imported. None of the samples showed signs of decomposition or degradation, making it unlikely that they had had their isotope signatures overwritten by strontium from groundwater after being buried, something which can be a severe problem in wetter climates, but is less so in arid Nubia.

The first sample chosen, NT1, was a section of decorated warp-faced woollen fabric (woollen fabric in which the threads are packed together closely, hiding the weft) with roughly 14-16 warp threads and 8 weft threads per cm². This fragment was recovered from the bottom of a funerary chamber beneath Tumulus 24 in the El-Ar 1 cemetery, near the El-Ar village in Shamkhiya District. The El-Ar 1 cemetery has been dated to the 2-3rd centuries AD, with decorated fabrics being very rare there.

Fragment of warp-faced wool tabby, sample NT1. Magdalena Wozniak in Wozniak & Belka (2022).

The second fragment used, NT2, is a piece of dark brown plain tabby woollen fabric, woven from S-spun threads, recovered from the El-Ar 4 Christian cemetery, and which could indicate a date anywhere between the sixth and fifteenth centuries AD. The fragment has 8-9 warp and 7 weft threads per cm², and comes from a section of shroud, which is in turn likely to have been a cloak or blanket used by the buried person and re-used as a shroud upon their death.

Fragment of the wool shroud, sample NT2. Magdalena Wozniak in Wozniak & Belka (2022).

Sample NT6 is a course wool plain tabby, woven with 8 warp and 8 weft threads per cm², taken from the shroud of a naturally mummified body (i.e. preserved by burial in a dry environment, rather than Human intervention). The fragment is brown in colour, and very desiccated. The mummy was buried in a supine position, with hands resting on hips, which is indicative of a Christian burial, again implying the 6th-15th centuries AD.

Close-up of mummy’s shroud, sample NT6. Magdalena Wozniak in Wozniak & Belka (2022).

Sample NT7 is a section of woollen kilim (woven tapestry rug). This has a dense weave with 7 warp threads and 32 weft threads per cm², and is woven in the slit-tapestry style, which creates the same pattern on both sides. The warp is a 2-ply z-spun (clockwise) cream wool, while the weft is single-ply z-spun wool in a variety of colours, including red, green, blue, orange, yellow and pink, giving a pattern of geometric and floral designs against a red background. The kilim was discovered in the town of Meinarti near the 2nd cataract in 1963, and has been dated to the 14th century AD.

Fragment of wool kilim from Meinarti, sample NT7, before conservation. Magdalena Wozniak in Wozniak & Belka (2022).

Sample NT3 is a piece of weft-faced tabby cotton cloth from the El-Ar 4 Christian cemetery. The threads are S-spun and of a golden colour, with the weft threads thicker than the warp threads, and a thread-density of 11 warp threads and 19 weft threads per cm². This is a common, medium-quality cloth type at archaeological sites on the Middle Nile.

Fragment of cotton tabby, sample NT3. Magdalena Wozniak in Wozniak & Belka (2022).

Sample NT4 is a fragment of cotton plain tabby from a Late Antique (2nd to 5th century AD) burial site at El-Ar. It is comprised of Z-spun white threads with traces of blue, green, and red pigments, probably a sign of resist dying (dying a finished fabric, while using wax or a similar substance to control which parts of the fabric the dye reaches), and a thread density of 22-24 threads per cm² for both warp and weft.

Bi-coloured threads from the cotton tabby, sample NT4. Magdalena Wozniak in Wozniak & Belka (2022).

Sample NT5 comes from the shroud of a naturally mummified body of unknown providence in the collection of the National Corporation for Antiquities and Museums. The textile is desiccated, low density, cotton tabby with a thread count of 8 warps and 8-9 wefts per cm². The threads are Z-spun, and have a golden colour. This mummy was also preserved in a supine position, with hands on hips, indicating a Christian burial, between the 6th and 15th centuries AD.

Fragment of cotton tabby woven from Z-spun threads, sample NT5. Magdalena Wozniak in Wozniak & Belka (2022).

Precambrian rocks of the Arabian-Nubian shield are widely exposed between the 2nd and 5th cataracts of the Nile. These exposures show a large variety of magmatic and metamorphic rocks, separated by suture zones with small occurrences of ophiolites and deep-water sedimentary rocks. To the west of the Nile Valley these are bordered by younger sedimentary rocks, predominantly Silurian sandstones. These rocks are overlain unconformably by the rocks of the Nubian Sandstone, which spreads across much of northern Africa, and includes a range of continental, esturine and marine sediments (predominantly sandstones), which in Sudan are predominantly of Cretaceous age. These Nubian Sandstone deposits have been mostly eroded away in the northeast of the country, exposing the underlying Precambrian basement, but extensive exposures are still present in the Bayuda Desert in the south, and the area to the west of the Nile. Tertiary Basalt rocks, which have intruded into these overlying strata, are exposed in the south of the country, around Abu Hamad. The floodplains of Nile Valley is also home to an extensive succession of Tertiary Sediments. 

Simplified geological map of northern Sudan. Red asterisks  indicate places where the investigated wool and cotton textiles were found. Numbers refer to the samples numbers. Inset shows the location of the study area. Wozniak & Belka (2022).

The volcanic rocks of the Precambrian basement of northern Sudan have strontium⁸⁷/strontium⁸⁶ ratios in the range 0.7024 to 0.7071, while the plutonic and metamorphic rocks of the basement have ratios in the range 0.7158 to 1.0039. The Cretaceous sediments of the Nubian Sandstone have strontium isotope ratios reflective of those of the basement rocks, with two clusters of values, around 0.7070 and 0.7160.

The alluvial sediments of the Desert Nile Valley are dominated by material derived from the Blue Nile and Atbara rivers, which drain from the Ethiopian Highlands, an area dominated by Cainozoic Volcanic rocks. These sediments have isotopic ratios in the range 0.7047 to 0.7076, a range which includes that of modern Nile water, at 0.7062. Nile muds dating from the end of the African Humid Period, about 45 000 years ago, show a strontium isotope ratio of 0.7052–0.7057, while those dating from between 1000 BC and 500 AD (i.e. between 3000 and 1500 years ago) show an isotope range of 0.7058–0.7076.

Samples NT1, NT2, and NT6 are all low-density woollen tabbies made from S-spun threads, technologically consistent with local manufacture. Sample NT1 contains cream and dark wool, used to make a pattern, while NT1 and NT6 are made entirely of undyed, dark wool. Lighter, cream-coloured wools are rare in the El-Ar assemblage, which may reflect the genetic structure of the local flocks (i.e. many brown Sheep and few cream Sheep). Alternatively, the local Sheep of the period may have been entirely brown, with cream wool being an imported commodity.

Sample NT7 is quite different from these, made up of coloured, Z-spun threads woven together using the split-tapestry technique to produce a decorative pattern, which is likely to indicate that this was an imported item. Furthermore, furthermore, the red dye used on some of the wool appears to have been treated with a lac dye, derived from the Scale Insect, Laccifer lacca, which is found in South and Southeast Asia and South China, but quite alien to the Nubia, where red dyes were traditionally derived from the Madder Plant. This apparently non-local item dates from the 14th century, a time when Meinarti was occupied by the Beni Ikrima, a nomadic group from the Maghreb region.

All four wool samples yielded strontium isotopic ratios within the range 0.7075 to 0.7084. In order to better compare these to the local environment, Wozniak and Belka also obtained strontium isotope ratios from Sheep and/or Goat remains (the two are hard to tell apart) from several archaeological sites between the 2nd and 4th cataracts. All of these remains are known to be older than the wool samples, dating to between 2500 and 500 BC, and gave isotopic ratios in the range 0.7068 to 0.7082 (one set of remains gave a much higher reading, of 0.7109, though this is likely to indicate that the Animal was of non-local origin).

Diagram showing the strontium isotope signatures of the  investigated wool textiles (yellow spots; numbers refer to sample numbers) in comparison to Strontium isotope  composition of Ovis/Capra remains found in the region  between the 2nd and 4th cataracts. Wozniak & Belka (2022).

Three of the investigated wool samples, NT1, NT6, and NT7, had isotopic ratios entirely consistent with archaeologically derived Sheep/Goat remains from the region, and the fourth, NT2, fell only slightly outside this range, and still within the range of Cattle and Human remains from the Desert Nile Valley.

Of the three cotton samples, only one, NT3, was made of a yarn spun in an anticlockwise, S-direction, typical of local manufacture in Nubia or Egypt. The other two, NT4 and NT5, were spun in a clockwise, Z-direction, which may indicate non-local manufacture. One of these, NT4, also shows signs of a resist-dying technique, not known in Nubia in the 2nd-5th centuries AD, but common in textiles from India during this period.

These three samples show a narrow isotope ratio range, from 0.7084 to 0.7086, which makes it likely that they were derived from crops grown within a limited geographical area. As a crop, cotton requires a rather specific set of conditions, with a hot dry climate, and large amounts of available water for several months of the year. This can be provided in the Nile Valley between the confluence of the White and Blue Niles and the 2nd cataract, although water and plants derived from this region show isotope ratios below 0.7075, ruling this region out as an origin point for the cotton in the study. Cotton is also grown around the Nile Delta, and ancient cotton fibres and seeds have been recovered from other sites along the Lower Nile, suggesting that cotton may have once been grown more widely. Strontium isotopic signatures are not available for sediments from all of these areas, but the isotopic signature of the Nile water, at about 0.7069, makes it unlikely that any of these floodplains have an isotopic ratio above about 0.7075. Similarly, the sediments of the Atabara and Blue Nile valleys have average isotope ratios between 0.7041 and 0.7060. All of these locations therefore seem unlikely as a point of origin for the cotton used to make the textiles included in the study. 

However, cotton grown in the Western Desert of lower Nubia typically has an isotopic value of about 0.7085, and limestones from the Western Desert of Egypt can have strontium isotope signatures in the range 0.7077 to 0.7078. Cotton is known to have been grown in this region in the 2nd-3rd centuries AD, using irrigation systems which drew upon shallow groundwater reservoirs, supplied by rainwater that had filtered through Eocene carbonates, which could conceivably produce a cotton with a strontium isotopic signature of about 0.7085.

Cotton is also known to have been produced in Meroe, on the lower White Nile to the south of Khartoum, during the Roman period, although both the water and plants from this region tend to have a higher isotopic ratio than the cotton from the study, excluding this region as a point of origin. 

Diagram showing the strontium isotope composition of the investigated cotton textiles (green spots; numbers refer to samples) in comparison to Sr isotope composition of selected elements of the natural environment in the Nile and White valleys. Wozniak & Belka (2022).

There is strong evidence for the production of cotton in Egypt and Sudan in Roman and later times, but the possibility of material also being imported from further afield should not be ruled out. Cotton was widely cultivated in India and on the Arabian Peninsula during antiquity, and both raw cotton and finished textiles could easily have been imported to Nubia via the Red Sea. Cotton seeds and textiles excavated at Mleiha in the modern United Arab Emirates have been shown to have originated from western India by their strontium isotope ratios. Unfortunately, strontium isotope information is only available for a few locations on the Arabian Peninsula or from India or Pakistan. However, several regions would be compatible with the isotope signatures obtained from the cotton samples, including the lower Indus River Basin, in India and Pakistan, the Kathijawar Peninsula on the west coast of India, the area covered by modern Kuwait, and the Oman Peninsula.

The isotope signatures obtained from the wool samples from archaeological sites in the Nubian Nile Valley all support a local origin. This is also supported by the technological features of three of the samples, NT1, NT2, and NT6, but not the fourth, NT7. This sample, a kilim rug from 14th century Meinarti, appears to have been made with a technology entirely alien to this part of the Nile Valley. However, it also dates from a time when the city of Meinarti was occupied by an alien group, the Beni Ikrima, who originated from the Maghreb region. Since the Maghreb has a geology with similar strontium isotopic ratios to that of northern Sudan, it is possible that the kilim was brought to the area by the Beni Ikrima from their homeland. However, it is also possible that the kilim was made locally by Beni Ikrima craftspeople from wool obtained from local, Nubian, flocks. Wozniak and Belka conclude that, given the available isotopic evidence, the more likely scenario is that the kilim was made locally, contrary to previous expectations.

In contrast, the isotopic signature of the cotton samples examined fits poorly with an origin in the Nile Valley. The samples all have very similar isotopic signatures, which seems to imply a common origin, although this is at odds with the different spinning techniques used. One of the samples, NT3, has an isotopic signature that fits well with the Dakhla/Kharga oasis in the Egyptian Western Desert, which has previously been identified as a possible site of ancient cotton cultivation. This piece also shows a technology consistent with production in the Nile Valley, notably an S-spun yarn. Importing cotton textiles from an oasis in the Western Desert would only make sense if local, Nubian, production was failing to meet demand. The frequency of cotton fabrics from archaeological sites in Nubia has been observed to have dropped during the Late Antique and Early Medieval periods, so this is not implausible, although an alternative explanation could be that the deceased person for whom this item was used as a shroud had travelled during their lifetime, either moving from the Western Desert to Nubia and bringing the cloth with them, or at some point visiting the Western Desert and obtaining the item there.

Sample NT4, on the other hand, appears much more likely to be of Indian origin, where a block printing technique using resist dying was common at this time. The isotopic signature of this sample matches that of the Kathijawar Peninsula on the west coast of India, leading Wozniak and Belka to conclude that this item was most likely imported from India. This adds evidence to the inclusion of the area around the 4th cataract into long distance trade networks, something previously indicated by the discovery of glass beads of foreign manufacture in the region.

Sample NT5 also appears to be non-local in origin, with a Z-spinning technique having been used, and a non-local isotopic signature. However, there is insufficient evidence to give a precise origin for this fragment at this time, with possible points of origin including  Indus River basin in Pakistan, the west coast of India, Kuwait, and the Oman Peninsula.

Although Wozniak and Belka were not able to determine the point of origin of all the fabrics in the study, their study shows the potential for determining the origin of ancient fabrics using strontium isotope ratios. The development of a wider data set of strontium isotope values for textiles could add to the information obtained by examining the technological aspects of textile-making, to provide a better understanding of the manufacture of and trade in cloth in the ancient world.

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Sunday, 18 December 2022

Drechslerella daliensis & Drechslerella xiaguanensis: Two new species of predatory Fungi from Yunnan Province, China.

Predatory Fungi are important controls on Nematode populations in many soil ecosystems. The majority of these Fungi belong to the Ascomycote Family Orbiliaceae, which currently includes 116 predatory species, divided into three genera. Arthrobotrys, which contains 67 species, and which traps Nematodes in a network of sticky hyphae, Dactylellina, which contains 34 species and which captures Nematodes with sticky knobs, and Drechslelrella, which contains 15 species, and which produces constricting rings, used to trap Nematodes in a lasso-like action.

The genus Drechslelrella was first described by the Indian mycologist Chirayathumadom Venkatachalier Subramanian in 1963, and has been found in a wide variety of ecosystems, including forest soils, Mangrove sediments, freshwater sediments, brackish water sediments, heavy metal polluted areas and even in tree trunks and animal faeces. They are typically found in the upper part of the soil or overlying humus layer, where the density of Nematodes appears to be highest. The constricting rings produced by these Fungi are made up of three cells, which swell rapidly when a Nematode is detected. 

In a paper published in the Biodiversity Data Journal on 16 December 2022, Fa Zhang of the Institute of Eastern-Himalaya Biodiversity Research at Dali University, and the Center of Excellence in Fungal Research and School of Science at Mae Fah Luang University, Saranyaphat Boonmee, also of the Center of Excellence in Fungal Research and School of Science at Mae Fah Luang University, Jutamart Monkai, again of the Center of Excellence in Fungal Research at Mae Fah Luang University, and Xiao-Yan Yang and Wen Xiao, also of the Institute of Eastern-Himalaya Biodiversity Research, and of the Key Laboratory of Yunnan State Education Department on Er’hai Lake Basin Protection and the Sustainable Development Research, at Dali University, describe two new species of Drechslerella from fire-disturbed forest soil from the slopes of Cangshan Mountain, to the west of Dali city in Yunnan Province, China.

The new Fungi were cultivated from soil samples spread on agar, and prompted to produce traps by the introduction of the free-living Nematode Panagrellus redivivus as bait. They were confirmed as new species by the extraction of DNA, and comparison to other species on the GenBank database, using the BLASTn online tool. The phylogenetic relationships of the new species were established using the MrBayes software package.

The first new species is named Drechslerella daliensis, where 'daliensis' means 'from Dali', in reference to the city. This Fungus formed white, cottony colonies on the cultivation medium, reaching a diameter of 50 mm after 18 days. Two types of conidia (spore producing bodies) were produced, both on conidiophores (conidia-bearing hyphae) 125-335 µm in length. The macroconidia were roughly 20-49.5 µm long and 8.5-15 µm wide, smooth, ellipsoid, broadly rounded at the apex and truncated at the base. The microconidia were 6.5-22 µm long and 3.5-7 µm wide, smooth, clavate or bottle-shaped, broadly rounded at the apex and truncated at the base. Drechslerella daliensis was observed to trap Nematodes with constricting rings on stalks 5.5–11 µm long, with an outer diameter of 21–32 µm and an inner diameter of 2–21 µm.

Drechslerella daliensis (holotype, CGMCC3.20131). (a) Culture colony; (b), (c) Macroconidia; (d) Microconidia; (e) Constricting rings; (f), (g) Conidiophores. Scale bars: (a) 1 cm; (b)–(g) 10 µm. Zhang et al, (2022).

The second species is named Drechslerella xiaguanensis, where 'xiaguanensis' means 'from Xiaguan' in reference to the district where the soil samples were collected. This Fungus also formed white, cottony colonies on the growth medium, reaching 50 mm in diameter after 15 days. The conidia of this species were born on conidiophores 145-315 µm in length, with a single type of conidia being produced, these being 33-52 µm in length and 9.5–28 µm in width. Constricting rings were born on stalks 5–11.5 µm long, and had an outer diameter of 19–27.5 µm and an inner diameter of 12.5–20.5 µm.

Drechslerella xiaguanensis (holotype, CGMCC3.20132). (a) Culture colony; (b), (c) Conidia; (d) Germinating conidia; (e) Constricting rings; (f), (g) Conidiophore. Scale bars: (a) 1 cm; (b)–(g) 10 µm. Zhang et al. (2022).

The phylogenetic analysis confirmed that both species could be placed within the genus Drechslerella, with Drechslerella daliensis being recovered as the sister species to Drechslerella hainanensis, known from Hainan, an island province of China in the South China Sea, and Drechslerella xiaguanensis as the sister species to Drechslerella bembicodes, a species from New Zealand.

Maximum Likelihood tree, based on combined ITS, TEF1-α and RPB2 sequence data from 42 Nematode-trapping taxa in Orbiliaceae. Bootstrap support values for Maximum Parsimony (red) and Maximum Likelihood (black) equal or greater than 50% and Bayesian posterior probabilities values (green) greater than 0.90 are indicated above the nodes. New isolates are in blue, ex-type strains are in bold. Zhang et al. (2022).

Zhang et al. note the the network of sticky hyphae used by the genus Arthrobotrys appears to be a more efficient trap than the methods used by Drechslerella or Dactylellina, and that, under normal circumstances, this genus is the most abundant in the upper soil layer, where Nematodes are most abundant. However, in the fire-damaged forest soils, the reverse appeared to be the case, with Arthrobotrys almost absent, while Drechslerella and Dactylellina are abundant. They theorise that in this environment, Arthrobotrys has been killed off by the burning of the upper soil layer, allowing the other two genera to invade rapidly from colonies in deeper soil layers.

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Twenty four now confirmed dead following landslide in Selangor State, Malaysia.

Twenty four people, including seven children, have now been confirmed dead following a landslide which hit a campsite at Batang Kali in the Hulu Senlangor District of Selangor State, Malaysia, on Friday 16 December 2022.  A further seven people are missing following the incident, although it is now thought there is little chance of finding further survivors, as the site has been covered by a thick layer of heavy, suffocating mud. Rescue teams from the Selangor Fire and Rescue Department with Dogs are still working at the site, but this is now essentially a search for the bodies the missing.

A rescuer crew member pats a sniffer dog being used to aid in the search for victims of the landslide in Batang Kali, Selangor, Malaysia, 17 December 2022. Hasnoor Hussain/Reuters.

The owners of the campsite, at the Father's Organic Farm, about 50 km north of Kuala Lumpur, are being questioned by the Royal Malaysian Police following the incident. Local authorities report that the site lacked permission for a campsite, being licensed for organic farming only, but that there were in fact three separate campsites on the property.

At the time of writing, only a single victim has been named, Nurul Azwani Kamarulzaman, 31, from Kuala Lumpur, who is described as a kitchen assistant at a school who was visiting the site on a two night trip with teachers and pupils from the school where she worked.

The event is reported to have been triggered by several days of heavy rain associated with Malaysia's Northeast Monsoon. Landslides are a common problem after severe weather events, as excess pore water pressure can overcome cohesion in soil and sediments, allowing them to flow like liquids. Approximately 90% of all landslides are caused by heavy rainfall.

Landslides are a common problem after severe weather events, as excess pore water pressure can overcome cohesion in soil and sediments, allowing them to flow like liquids. Approximately 90% of all landslides are caused by heavy rainfall.

Northeast and Southwest Monsoons in Southeast Asia. Mynewshub.

Monsoons are tropical sea breezes triggered by heating of the land during the warmer part of the year (summer). Both the land and sea are warmed by the Sun, but the land has a lower ability to absorb heat, radiating it back so that the air above landmasses becomes significantly warmer than that over the sea, causing the air above the land to rise and drawing in water from over the sea; since this has also been warmed it carries a high evaporated water content, and brings with it heavy rainfall. In the tropical dry season, the situation is reversed, as the air over the land cools more rapidly with the seasons, leading to warmer air over the sea, and thus breezes moving from the shore to the sea (where air is rising more rapidly) and a drying of the climate.

Diagrammatic representation of wind and rainfall patterns in a tropical monsoon climate. Geosciences/University of Arizona.

Malaysia has become increasingly landslip-prone in recent years due to extensive deforestation, which leaves soil exposed to heavy tropical rainfall. Concerns have also been raised about the large number of construction and new development sites on steep hillslopes in urban areas, where workers are particularly vulnerable to landslip events during the Monsoon Seasons.

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Naja fuxi: A new species of Cobra from China.

Cobras, Naja spp., are a highly distinctive and widespread group of Venomous Snakes, responsible for many cases of Snake-bites in Humans across a wide geographical area every year, with the number of bites being particularly high in South and Southeast Asia and southern China. The toxins found within the venom of Cobras varies from species to species, with the effect that an antivenom developed to treat the bite of one species will not counteract the venom from the bite of another. Unfortunately, the taxonomy of Asian Cobras is still not fully understood, with many populations potentially assigned to the wrong species, or even to cryptic species (species which resemble other species upon physical examination, but which are genetically distinct).

All Asian Cobras were originally placed in the species Naja naja by Linnaeus in 1758, with multiple subspecies and colour variants recognised in the following years. Eventually, this proved to be unreliable, with the species being split into several new species from 1768 onwards. There are now twelve recognised species of Cobra in Asia, including two found in China.

The Monocled Cobra, Naja kaouthia, was first described by René-Primevère Lesson from Bengal (modern Bangladesh) in 1831. Populations of Cobras assigned to this species are currently found in northeastern India, Bangladesh, Bhutan, Nepal, Myanmar, Cambodia, Laos, northern Malaysia, southern Vietnam, Thailand and southern China. However, these species vary greatly in their colouration, spitting behaviour, and even the composition of their venom, making it likely that not all these Cobras do in fact belong to the same species. In China this species is known from the south and southwestern parts of Yunnan, the southwestern part of Sichuan, Xizang (Tibet Autonomous Region), and Guangxi. 

The Chinese Cobra, Naja atra, is known from southern China, south of the Yangtze River, including Zhejiang, Fujian, Taiwan, Guangdong, Hainan, Guangxi, Macao, Hong Kong, Jiangxi, Anhui, Hubei, Hunan and Guizhou. It is also found in northern Vietnam. The Yunnan population of this species is known to be genetically distinct from other populations, including that from Zhoushan Island in Zhejiang Province, which is the population from which the species was first described. 

Thus, both populations of Cobras in Yunnan Province, appear to present taxonomic problems, and may not belong to the species to which they are currently assigned.

In a paper published in the journal Animals on 9 December 2022, Sheng‑Chao Shi of Guangxi Normal University, and the Chengdu Institute of Biology, Gernot Vogel of the Society for Southeast Asian Herpetology, Li Ding, also of the Chengdu Institute of Biology, Ding‑Qi Rao and Shuo Liu of the Kunming Institute of Zoology, Liang Zhang of the Institute of Zoology of the Guangdong Academy of Sciences, Zheng‑Jun Wu, also of Guangxi Normal University, and Ze‑Ning Chen, again of Guangxi Normal University, and the Chengdu Institute of Biology, re-examine the distributions of Naja kaouthia and Naja atra in China and South and Southeast Asia, and describe a new species of Cobra from China.

The new species is named Naja fuxi, in reference to Fuxi (伏羲), an ancestral spirit in Chinese mythology, often depicted as a half-Man, half-Snake figure in a rearing Cobra posture. It is described from 34 specimens from Sichuan and Yunnan provinces, from populations previously assigned to Naja kaouthia.

Naja fuxi in life and habitats. (A), (B) Dorsolateral view and hood pattern of adult female paratype CIB DL2018081005 from Panzhihua, Sichuan, China; (C), (D) Dorsolateral and front view of an unvouchered adult from Jiangcheng, Pu’er, Yunnan, China; (E), (F), two adults from Wenshan, Yunnan, China; (G) Subtropical Forest at type locality Panzhihua, Sichuan, China; (H) Tropical monsoon forest and farmland at Jiangcheng, Pu’er, Yunnan, China. Sheng-Chao Shi, Li Ding & Liang Zhang in Shi et al. (2022).

The examined adult specimens of Naja fuxi ranged from 680 to 1165 mm in length, and can be distinguished from other Cobras by the presence of a series of well-spaced narrow crossbands along the length of the body and tail. These Snakes are mostly buff-coloured, and have 19-29 scale rows on the front part of their bodies, 19-27 on their mid-section, and 12-19 on the posterior part. The fangs are short, and not adapted to spitting.

Naja fuxi was found in tropical and subtropical areas at altitudes of between 1000 and 1400 m above sealevel. It favours gentle slopes, with open bush or forest edge environments. It is known to consume a wide range of prey, including Frogs, Snakes, Birds, and small Mammals. It sometimes enters settlements to take chicks, creating a potential for conflict with Humans, and records suggest it is the Snake responsible for most bites suffered by Humans in Xishuangbanna Prefecture.

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Saturday, 17 December 2022

Major Cholera outbreak in Haiti contributes to ongoing Humanitarian crisis.

Haiti is experiencing a resurgence of Cholera, with the outbreak initially reported on 2 October 2022 after more than three years with no reported cases of the disease, according to a press release issued by the World Health Organization on 13 December 2022. The epidemic appears to be evolving rapidly, and spreading to all parts of the country. There is also an ongoing complex humanitarian crisis that is rapidly deteriorating due to gang violence, socio-political conflicts, insecurity, fuel shortages, and economic instability. This has resulted in limited access to healthcare and essential services, including water, food, sanitation, and supply services. This situation makes the population of Haiti highly vulnerable to the ongoing Cholera outbreak.

Between 2 October and 6 December 2022, a cumulative total of 13 672 suspected Cholera cases, including 283 deaths (giving a case fatality rate of 2.05%) have been reported by the Haiti Ministry of Public Health and Population from all ten departments in the country. Eighty-six percent of all reported cases (11 751 people) have been hospitalised. The Ouest Department accounts for the highest percentage (89%) of suspected cases (12 112 individuals). Of the 13 672 suspected Cholera cases reported, 59% are male and the most affected age groups are children aged 1 to 4 years (19%), followed by adults aged 20 to 29 years (15%) and 30 to 39 years (15%).

A total of 1193 confirmed cases have been reported. Three departments account for 94% of these: Ouest (79% or 943 cases), Centre (13% or 156 cases), and Artibonite (2% or 28 cases). Laboratory confirmation was by rapid diagnostic test and stool culture was done for identification of Vibrio cholerae. Of the confirmed Cholera cases with available information, 57% (680) are male and the most affected age groups are those aged 1 to 4 years (19%) followed by 30 to 39 years (15%) and 5 to 9 years (14%).

Geographical distribution of suspected cholera cases (n=13 276) reported in Haiti, 29 September to 6 December 2022. Haiti Ministère de la Santé Publique et de la Population/World Health Organization.

By November 2022, a total of 368 suspected cases, including 14 confirmed cases and 14 deaths had been reported from the Port-au-Prince Prison. These cases are included among the cases reported in the Department of Ouest. Additionally, on 21 November 2022, the Ministry of Public Health of the Dominican Republic it had reported two confirmed imported cases of Cholera, both from Haiti.

Cholera was first reported in Haiti in October 2010. Nationally, a total of 820 000 cases of cholera including 9792 deaths were reported between October 2010 and February 2019. The last confirmed case in this outbreak was reported in January 2019 in I’Estère in the Artibonite Department of Haiti. The country did not report a single case of Cholera in the three years from January 2019 to January 2022. The current outbreak is also occurring in the context of a complex Humanitarian crisis that is exacerbating the burden of disease and hindering response measures.

Number of suspected Cholera cases (13 672) reported in Haiti from 2 October to 6 December 2022. Haiti Ministère de la Santé Publique et de la Population/World Health Organization.

Cholera is an acute enteric infection caused by ingesting the Bacterium Vibrio cholerae, a Gram-negative, comma-shaped Gammaproteobacteria, related to other pathogenic Bacteria such as Yersinia pestis (Bubonic Plague), and Esherchia coli (food poisoning), which present in contaminated water or food. It is mainly linked to insufficient access to safe drinking water and inadequate sanitation. It is an extremely virulent disease that can cause severe acute watery diarrhoea resulting in high morbidity and mortality, and can spread rapidly, depending on the frequency of exposure, the exposed population and the setting. Cholera affects both children and adults and can be fatal if untreated.

SEM image of Vibrio cholerae Bacteria. Kim et al. (2000).

The incubation period is between 12 hours and five days after ingestion of contaminated food or water. Most people infected with Vibrio cholerae do not develop any symptoms, although the Bacteria are present in their faeces for 1-10 days after infection and are shed back into the environment, potentially infecting other people. Among people who develop symptoms, the majority have mild or moderate symptoms, while a minority develop acute watery diarrhoea with severe dehydration. Cholera is an easily treatable disease. Most people can be treated successfully through prompt administration of oral rehydration solution.

Cholera can be endemic or epidemic. A Cholera-endemic area is an area where confirmed Cholera cases were detected during the last three years with evidence of local transmission (cases are not imported from elsewhere). A Cholera epidemic can occur in both endemic countries and in non-endemic countries. Uninfected dead bodies have never been reported as the source of epidemics.

The consequences of a humanitarian crisis – such as disruption of water and sanitation systems, or the displacement of populations to inadequate and overcrowded camps – can increase the risk of Cholera transmission, should the Bacteria be present or introduced.

A multi-sectoral approach including a combination of surveillance, improving access to clean water, sanitation, and hygiene promotion, rapid access to treatment, risk communication and community engagement and oral Cholera vaccines is essential to control cholera outbreaks and to reduce deaths.

The current cholera outbreak in Haiti, combined with the ongoing crisis related to gang violence, social unrest, and insecurity, has strained the health system’s response capacity. The overall risk for this outbreak in Hispaniola is assessed as very high, due to the current socio-economic situation, ongoing humanitarian crisis, food insecurity and poor health conditions are affecting a large proportion of the population, leaving them vulnerable to the risk of Cholera infection and recurrence of Cholera, the limited access of the general population to safe drinking water and to sanitation facilities, the violence and insecurity prevalent in many parts of Haiti, which leaves the public health system and international partners with limited human resources, reducing the capacity to respond to the crisis, and the lack of access to fuel and insecurity lead to difficulties to import supplies and challenges to access the affected areas.

These challenges further increase the risk of undetected cases and delayed response efforts. The insecurity and access to fuel hinders the population's access to health care, leading to delayed treatment and potentially severe outcome. Considering the magnitude and widespread nature of the Cholera epidemic that is ongoing in Haiti, in conjunction with the complex Humanitarian crisis the country is currently facing, the limited resources to control the epidemic, as well as the constant migration flows towards the Dominican Republic, the risk in Hispaniola is assessed as very high.

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