Tuesday, 22 October 2024
Yunfuconcha bimenta: A Heteroconch Bivalve from the Middle Ordovician of Guangdong Province, China.
Tuesday, 14 May 2024
Setapedites abundantis: A stem-group Euchelicerate from the Ordovician Fezouata Shale of Morocco.
The Euchelicerates are a large group of Arthropods, comprising the living Arachnids and Xiphosurans (Horseshoe Crabs), as well as extinct groups such as the Eurypterids (Sea Scorpions), Chasmataspidids and the Synziphosurines. The closest living relatives of the Euchelicerates are the Pycnogonids (Sea Spiders), with the two groups together forming the Chelicerata. However, the closest outgroup to the Euchelicerata among the Arthropod groups of the Lower Palaeozoic is less certain, with groups such as the Megacheira, Artiopoda, Vicissicaudata, and Habeliida all suggested. Understanding the relationship between Euchelicerates and other Arthropods is dependent on understanding the order in which the group acquired its key features, i.e. the chelicerae (frontal appendages) from which the group gets its name, and the organisation of the body segments into two divisions, the prosoma, which hosts both the sensory organs and the walking limbs, and the opisthosoma, which hosts the book gills. The Synziphosurines, a (possibly paraphyletic or polyphyletic) stem group of Euchelicerates known from Silurian to Carboniferous deposits, are thought to offer a potential key to this, although very few complete specimens are known. Two noteworthy Synziphosurines (and the two earliest known species to date) are Offacolus kingi and Dibasterium durgae, both from the Silurian Herefordshire Lagerstätte of England, both of which have biramous (branching) limbs (a trait unknown in more derived Euchelicerates), and which have been consistently recovered as the two basalmost Euchelicerates in phylogenetic analyses.
In a paper published in the journal Nature Communications on 7 May 2024, Lorenzo Lustri of the Institute of Earth Sciences at the University of Lausanne, Pierre Gueriau, also of the Institute of Earth Sciences at the University of Lausanne, and of the Université Paris-Saclay, and Allison Daley, again of the Institute of Earth Sciences at the University of Lausanne, describe a new species of Synziphosurine Euchelicerate from the Early Ordovician Fezouata Shale of Morocco, and discuss the implications of this species for the origin of the Euchelicerate clade.
The Fezouata Shale is noteworthy for the production of a large number of exceptionally preserved Arthropods, as well as Molluscs and Echinoderms dating to about 478 million years ago, during the early stages of the Great Ordovician Biodiversification Event, providing key insights into this interval in the history of life.
The new species is named Setapedites abundantis, where 'Setapedites' means 'hair-foot', in reference to the presence of a brush-like arrangement of hairs on its prosomal exopods (feet), and 'abundantis' refers to the super-abundant nature of the species, which is one of the most numerous fossils in the Fezouata Shale. The species is described from two large collections of specimens, each comprising hundreds of individuals, belonging to the Musée cantonal de géologie Lausanne, and the Yale Peabody Museum.
Setapedites abundantis possesses an elongate, dorsoventrally flattened body, divided into an anterior prosoma bearing a fused dorsal headshield, and an unfused opisthosoma clearly differentiated into (medially) a pre-abdomen and (posteriorly) an abdomen. Its total length varies between 4.33 and 6.5mm (excluding appendages and telson), its maximum width (prosoma) between 2.23 and 2.9mm.
A phylogenetic analysis including Setapedites abundantis found that it grouped with Offacolus kingi and Dibasterium durgae, together the family Offacolidae, togther forming the sister group to the Crown Euchelicerates, with the Habeliida forming the closest outgroup.
The Pycnogonids (Sea Spiders) have long been seen as the sister group to the Euchelicerates, with the two groups together forming the clade Chelicerata. While they are clearly the closest living Animals to the Chelicerates genetically, the assumption that they are closer than many fossil groups has relied upon morphological similarities, notably the presence of a pair of limbs on the head called the chelifores, which have been assumed to be homologous with the chelicerae of the Euchelicerata, a head tagama made up of four segments, and uniramous limbs. However, the presence of biramous limbs in both the Offacolidae, recovered as the basalmost stem group of the Euchelicerates and Habeliida, recovered as the closest outgroup, casts doubts upon this analysis. Modern Pycnogonids have a very specialised bodyplan, and the group has a very limited fossil record, making it hard to assess how Sea Spiders are related to Palaeozoic Arthropod groups.
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Thursday, 18 January 2024
Llwygarua suzannae: An Echiuran Worm from the Middle Ordovician Castle Bank Biota of Wales.
Echurian Worms, or Spoonworms, are a group of Worms so morphologically distinctive that they were long thought of as being a separate phylum, although genetic analysis has shown them to be Polychaete Annelids, closely related to Capitellids. The group have a limited fossil record, with the oldest fossil considered to plausibly belong to the group being Coprinoscolex ellogimus, from the Carboniferous Mazon Creek Biota of North America.
In a paper published in the journal Acta Palaeontologica Polonica on 29 December 2023, Joseph Botting of the Nanjing Institute of Geology and Palaeontology and the Department of Natural Sciences at Amgueddfa Cymru-National Museum Wales, and Lucy Muir, also of the Department of Natural Sciences at Amgueddfa Cymru-National Museum Wales, describe a new species of Echiuran Worm from the Middle Ordovician Castle Bank Biota of Wales.
The new species is named Llwygarua suzannae, where 'Llwygarua' means 'love spoon' in Welsh, a reference to the carved wooden spoons traditionally given as tokens of love in Wales, and 'suzannae' honours Suzanne Douel, a retired biology teacher who has supported research on the Castle Bank fauna since its discovery.
The species is described from two specimens from the Castle Bank locality, near Llandrindod in Powys, Wales. These have a number of key features associated with Echiuran Worms, including the spoon-like proboscis, a diagnostic muscle-band arrangement, anterior setal pair and the presence of a differentiated caudal region.
Llwygarua suzannae shows a remarkable degree of similarity to modern Thalassematid Echiurans such as Ochetostoma spp., to the extent that Botting and Muir consider that it could be placed in the same genus, although they conclude that putting an Ordovician species in a modern genus would be inappropriate, without much better evidence than is currently available.
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Tuesday, 16 February 2021
Cantabrigiaster fezouataensis: A new Somasteroid Echinoderm from the Early Ordovician Fezouata Lagerstätte in Morocco.
Asterozoans, whose most familiar members include Starfish and Brittle Stars, are the dominant group of extant Echinoderms based on their diversity, abundance and biogeographic distribution. Despite their ecological success and a fossil record spanning more than 480 million years, the origin and early evolution of Asterozoans, and those of crown-group Echinoderms more generally, remain uncertain given the difficulty of comparing the organisation of the calcified endoskeleton in diverse Lower Palaeozoic groups, such as the Edrioasteroids and Blastozoans. The extraxial–axial theory, which supports the homology of the biserial ambulacral ossicles of pentaradial and non-pentaradial Echinoderms based on embryonic and ontogenetic data, has been proposed as a developmentally informed model that facilitates comparisons among groups with disparate morphologies. Although the extraxial–axial theory can potentially clarify the early evolution of crown-group Echinodermata, the broad implications of this hypothesis have never been examined under a comprehensive quantitative phylogenetic framework. Consequently, the main phylogenetic predictions of the extraxial–axial theory, pertaining to the evolutionary relationships of Cambrian and Ordovician Echinoderms, such as the origin of the crown group from Edrioasteroid-like ancestors, although analysed with other homology schemes, have yet to be critically tested using the extraxial–axial theory.
In a paper published in the journal Biology Letters on 20 January 2021, Aaron Hunter of the Department of Earth Sciences at the University of Cambridge and the School of Earth Sciences, at the University of Western Australia, and Javier Ortega-Hernández of the Museum of Comparative Zoology and Department of Organismic and Evolutionary Biology at Harvard University, and the Department of Zoology at the University of Cambridge, describe a new Somasteroid Echinoderm from the Early Ordovician Fezouata Lagerstätte of Zagora, in thecentral Anti-Atlas of Morocco.
The exceptionally preserved morphology of the specimens reveals a unique plate organisation among Somasteroids, and allows us to test the phylogenetic implications of this taxon for the origin of total-group Asterozoa. Central to Hunter and Ortega-Hernádez's phylogenetic hypothesis is the presence of an imperforate extraxial body capsule on the aboral surface of the Somasteroids which is then lost in derived Asterozoans so that the aboral surface is entirely composed of perforate extraxial body wall, for example, carinals in Asteroids, and ventral, dorsal and lateral arm plates in Ophiuroids.
The new species is named Cantabrigiaster fezouataensis, where 'Cantabrigiaster' derives from Genus name derived from ‘Cantabrigia’, after the cities of Cambridge in the UK and USA, which were home to the influential Asterozoan workers John William Salter (University of Cambridge), Juliet Shackleton (neé Dean) (University of Cambridge) and Howard Barraclough ‘Barry’ Fell (Harvard University). No explanation is given for 'fezouataensis', although it appears to mean 'coming from Fezouata'.
Cantabrigiaster fezouataensis is a Somasteroid typified by biserial and offset ambulacrals with thin transverse bar, wide perradial groove, multiple interconnected virgal ossicles and aboral carinal region with network of spicule-like ossicles. Adambulacral ossicle series lacking along abaxial body margins (perpendiculars (virgals), structures 90° to the axial ambulacrals).
The designated holotype of the species (i.e. the specimen to which all other specimens are compared in order to determine whether they are the same species) is UCBL-FSL 424961, an articulated specimen and latex moulds deposited at the University of Lyon 1. This is derived from the primarily Stylophoran-dominated beds in the upper part of the Araneograptus murrayi Zone, late Tremadocian, Z-F2 (Jbel Tizagzaouine), Z-F4 (Bou Izargane) and Z-F9 (Bou Glef), in the lower part of the Fezouata Shale Formation, Lower Ordovician, Zagora area (central Anti-Atlas), Morocco. The 70 m thick interval yields assemblages typical of the Fezouata Biota at about 260–330 m above the base of the Ordovician.
Also referred to Cantabrigiaster fezouataensis are another 31 specimens, including: specimens housed at the Yale Peabody Museum, Yale University, Hotchkiss collection (YPM IP 535545–535559); the collections of Vizcaïno (UCBL-FSL 424962) and Lefebvre (UCBL-FSL 711938 and 711939) housed at the University of Lyon 1; and the Catto collection deposited in the Natural History Museum of Nantes (MHNN.P.045596).
Cantabrigiaster fezouataensis from the Lower Ordovician (?late Tremadocian) of Morocco. All body fossils. (a) YPM 535547, oral view. (b) Detail of dashed area in a. (c) YPM IP 535557-535558, oral and aboral view. (d) YPM IP 535559, aboral view. (e) Detail of dashed area in d. (f) YPM 535552, aboral view. (g) Detail of dashed area in (f). Abbreviations: am, ambulacral ossicles; cr, carinal region ossicles (preserved on the aboral surface); mc, mouth cavity; pb, podial basins; vr, virgal ossicles. Hunter & Ortega-Hernádez (2021).The arms of Cantabrigiaster fezouataensis are broad, petaloid and arranged in a pentagonal outline The aboral skeleton (carinal region) is composed of randomly scattered spicule-like ossicles arranged into an irregular network. On the oral side, the ambulacrals consist of flattened ossicles with a subquadrate outline. These ossicles abut each other following the orientation of the perradial axis. The perradial suture is straight, and the ambulacrals at either side are stepped out of phase by approximately half an ossicle. The abaxial organisation of the ambulacrals consists of an elevated perradial ridge, less than a quarter in width relative to the ambulacral, and bears a thin transverse bar that occupies a central position, conferring a T-shape in oral view. The perradial ridges of the ambulacral ossicles at either side of the perradial suture are substantially separated from each other, forming a wide oral groove. The podial basins are shared equally between adjacent ambulacrals. Abaxially, the following ossicle series consist of the perpendiculars, also known as virgals in Somasteroids. The perpendicular series is composed of interconnected and robust rod-like virgal ossicles without spines. These ossicles follow a perpendicular orientation relative to the perradial suture. The virgal ossicles close to the ambulacrals are the largest, becoming smaller in length and width towards the abaxial body margins. Likewise, adjacent perpendicular series are in direct contact with each other adaxially relative to the perradial suture, whereas it is possible to observe open gaps between them towards the abaxial body margins. Proximal (relative to the mouth) perpendicular series consist of up to nine virgal ossicles, which gradually decrease in number towards the tips of the arms. The circumoral ossicles are enlarged relative to ambulacral ossicles, and the first podial pore is shared equally with the small and sub-triangular mouth angle plates. The madreporite is not preserved.
The presence of virgal ossicles in Cantabrigiaster strongly supports its affinities with Somasteroids. Cantabrigiaster bears the greatest similarity to the Tremadocian taxa Chinianaster, Thoralaster and Villebrunaster, but is unique among somasteroids in lacking ossicles along the abaxial lateral margins of the arms. The arm construction of Cantabrigiaster consists of flattened and offset biserial ambulacrals, each of which articulates with an abaxially oriented perpendicular series composed of simple virgal ossicles. In addition to these features, the arms of all other Somasteroids also possess a series of axially oriented ossicles along the lateral margins that vary from small and bead-like, albeit with occasional spikes, in Tremadocian taxa, to robust and block-like in the stratigraphically younger (Floian) Ophioxenikos and Darriwilian) Archegonaster. The absence of this key character and the results of Hunter and Ortega-Hernádez's phylogeny demonstrate that Cantabrigiaster embodies the ancestral condition by virtue of lacking ossicles defining the lateral arm margins, whereas other Somasteroids record the first appearance of these structures along the edges of the arms, and their subsequent changes in size and shape. Based on this sequence,we propose that the origin of new axially oriented ossicle series in early Asterozoans required their formation on the abaxial edges of the arms. Our hypothesis implies that the proximity of axially oriented ossicle series relative to the perradial axis reflects the order of their evolutionary appearance since virgals are abaxially oriented, they are not directly comparable with any of the axially oriented ossicle series observed in Palaeozoic Asterozoans. In this context, Cantabrigiaster specifically lacks the adambulacral ossicle series present in more derived Somasteroids, Ophiuroids, Asteroids and Stenuroids (a group considered intermediate between Somasteroids and Ophiuroids/Asteroids), highlighting its profound significance for understanding the evolution of the Asterozoan body plan.
The extraxial–axial theory supports the homology of the ambulacrals across pentaradial total-group Echinoderms based on their developmental origin and postembryonic ontogeny, and allows comparison of the skeletal organization of Cantabrigiaster on a broader phylogenetic scale. Outside Asterozoa, the absence of adambulacrals in Cantabrigiaster draws parallels with Tremadocian Crinoids (e.g. Protocrinoids, Apektocrinus, Eknomocrinus), whose arm construction incorporates flattened and offset biserial ambulacrals articulated to an abaxially oriented (perpendicular) series of simple ossicles, here expressed as the cover plates. A similar axial skeletal organisation is also observed among Cambrian forms, most notably Edrioasteroids, which also possess flattened and offset biserial ambulacrals but lack feeding appendages, and to a lesser extent Blastozoans, which have feeding appendages formed by modified ambulacrals known as brachioles. The widespread occurrence of these characters among non-asterozoan groups suggests that their presence in Cantabrigiaster is symplesiomorphic.
Cantabrigiaster fezouataensis from the Lower Ordovician (Tremadocian) of Morocco. All latex molds. (a) Holotype UCBL-FSL 424961 (Van Roy coll.), oral view. (b) UCBL-FSL 711938 (Lefebvre coll.), oral view. (c) UCBL-FSL 424961 (Van Roy coll.), oral view. (d) UCBL-FSL 711939 (Lefebvre coll.), aboral view. (e) MHNN.P.045596 (Catto coll.), oral view. (f) UCBL-FSL 424962a (Vizcaïno coll.), aboral view. (g) UCBL-FSL 424962b (Vizcaïno coll.). Abbreviations: am, ambulacral ossicles; co, circumoral ossicles; cr, carinal region ossicles (preserved on the aboral surface); map, mouth angle plates; mc, mouth cavity; tb, transverse bar; pb, podial basins; pr, perradial ridge; ps, perradial suture; vr, virgal ossicles. Hunter & Ortega-Hernádez (2021).Hunter and Ortega-Hernádez's phylogenetic analysis of representative Lower Palaeozoic total-group Echinoderms tests the significance of Cantabrigiaster for the origin of Asterozoa. The dataset reflects the ambulacral homology proposed by the extraxial–axial theory, the oral symmetry model proposed by Universal Element Homology and Hunter and Ortega-Hernádez's hypothesis for the correspondence of axially oriented ossicle series in early Asterozoans. Bayesian and parsimony-based analyses recover practically identical topologies, despite a loss in tree resolution in the earliest divergent representatives that can be expected from the former methodology, indicating a robust phylogenetic signal within Asterozoa. Cantabrigiaster occupies the earliest diverging position within total-group Asterozoa, supporting our hypothesis that the absence of adambulacrals is an ancestral condition, rather than a case of secondary reduction. Tremadocian Somasteroids are resolved as a paraphyletic grade of stem-group Asterozoans, whereas the Floian Ophioxenikos and Darriwilian Archegonaster consistently occupy a more derived position as members of crown-group Asterozoa. The analyses argue against the monophyly of Stenuroids, but corroborate their close phylogenetic relationship to Ophiuroids, specifically as their earliest diverging stem-group representatives. These findings indicate that the evolution of a well-developed adambulacral ossicle series constitutes a critical step in the origin of crown-group Asterozoa, and suggest that the abaxially oriented virgals of Somasteroids became independently reduced, and ultimately lost, within the stem lineages of Ophiuroidea and Asteroidea.
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Wednesday, 19 August 2020
Molecular clock data sugests the first Arachnids ventured onto land in the Cambrian or Odovician.
Arachnids are an important group of terrestrial Arthropods, including the familiar Ticks, Mites, Spiders, and Scorpions, together with Pseudoscorpions, Camel Spiders, Vinegaroons, Whip Spiders, and a few other groups. Arachnids are important predatory Arthropods across almost every conceivable terrestrial habitat. While Ticks are ectoparasites that affect Humans and livestock, Spiders are ecologically the most successful Arachnids and as predators consume vast quantities of Insects. Thus, understanding when Arachnids colonised land and diversified is of interest from a macroevolutionary and macroecological perspective. Arachnids are chelicerates, together with the marine Horseshoe Crabs (Xiphosura) and Sea Spiders (Pycnogonida). They are the most speciose clade in Chelicerata, with more than 112 000 described extant species. Together with Hexapods and Myriapods, Arachnids represent one of three distinct and ancient events of Arthropod terrestrialisation (terrestrial Isopods are a younger addition to the continental Arthropod biota). While Arachnids have traditionally been considered monophyletic and terrestrial (apart from secondarily marine Mites) this picture has been challenged at different times. Scorpions were long thought to be the sister group of all other extant Arachnids or most closely allied to the aquatic 'Sea Scorpions', the Eurypterids. Early fossil Scorpions have been interpreted as aquatic, and in some cases even as marine. These phylogenetic hypotheses and interpretations of fossil ecology have been seen as requiring independent events of terrestrialisation. Some of these views have been overturned by strong molecular and morphological evidence for Scorpions being nested within the Arachnida as the sister group of the other Arachnids with book lungs, the Tetrapulmonata. Indeed, detailed correspondences in book lung morphology between Scorpions and tetrapulmonates support their homology. The supposed aquatic mode of life of various fossil Scorpions has also been questioned on both morphological and geological grounds, Another challenge to a single terrestrialisation event in arachnids came from analyses of phylogenomic datasets, which have often recovered the marine Xiphosura to be nested within Arachnida. This remains a contentious issue, as other phylogenomic analyses have yielded trees in which Arachnida is monophyletic.
Most Chelicerate lineages are predatory components of a diverse range of ecosystems, and the rock record attests to their presence in both earlier Palaeozoic marine settings and through into the Mesozoic and Cainozoic, which witnessed a prolific diversification of Spiders and other terrestrial Arachnids. The terrestrial rock record prior to the Silurian is very sparse and has presented some apparent discordances when investigating Myriapod, Hexapod, and Plant divergence times. While the body fossil record of terrestrial Plants and Arthropods does not extend much further back than the Silurian (roughly 443–419 million years ago), molecular clock estimates go back to the Ordovician (485–443 million years ago) and Cambrian (538–485 million years ago). However, likely Plant spores with desiccation-resistant adaptations extend back to the middle Cambrian. The fossil record presents no unequivocal evidence for crown-group Arachnids before the Silurian. The oldest crown-group Arachnids are of Silurian age (stem-group Scorpiones in the Llandovery), followed by the extinct Trigonotarbida in the late Silurian (early Přídolí), Acariformes and Opiliones in the Early Devonian (Pragian), and Pseudoscorpiones in the Middle Devonian (Givetian). Several other Arachnid orders first appear in the Carboniferous, including Araneae, Uropygi, Amblypygi, and Ricinulei. In contrast to a picture of scattered branches of the Arachnid crown-group first appearing in the Siluro–Devonian, older representatives of the Arachnid lineage are stem-group Arachnida, and are marine shoreline or brackish water/estuarine forms rather than being terrestrial. These include Chasmataspida and Eurypterida, the earliest members of which date to the Miaolingian Series of the Cambrian (Drumian Stage) and the Late Ordovician (Sandbian), respectively. Xiphosura-like Chelicerates have a good fossil record, showing considerable morphological stasis, with marine stem-group representatives of Xiphosura such as Lunataspis being documented from the Late Ordovician, about 445 million years ago, and a species from the Early Ordovician (Tremadocian) of Morocco extends the lineage’s history even deeper. With such a deep history revealed by the fossil record, any inferred phylogenetic position for Xiphosura within terrestrial Arachnids would imply that the marine ecology of this lineage should be a secondary acquisition. Although such a scenario is palaeontologically unlikely, molecular studies have often recovered Horseshoe Crabs in highly derived clades of Arachnids, such as sister groups to Opiliones or Palpigradi, or Scorpiones and Araneae.
As with other terrestrial groups, molecular dating has recovered old dates for the origin and main diversification of Arachnids. As part of wider campaigns investigating Arthropods using just a few Arachnid representatives, several previous syudies have recovered dates for the origin of Arachnida with credibility intervals bracketed between the Cambrian, in the first two studies, and Ordovician in the latter. One recent study reported a Chelicerate molecular phylogeny in which when they constrained Arachnida to be monophyletic inferred an Ediacaran origin for the group. Consequently, there are significant geochronological discrepancies, particularly for terrestrial lineages, between the molecular clock-based studies and the younger dates suggested by the first appearances of fossils. As fossils do not inform on the age of origin of clades, but rather provide minimum ages of divergence, clock-based methods are required to approach an accurate evolutionary timescale.
In a paper published in the journal Frontiers in Genetics on 11 March 2020, Jesus Lozano-Fernandez of the School of Biological Sciences and School of Earth Sciences at the University of Bristol, Alastair Tanner, also of the School of Biological Sciences at the University of Bristol, Mark Puttick of the Department of Biology and Biochemistry at the University of Bath, Jakob Vinther, again of the School of Biological Sciences and School of Earth Sciences at the University of Bristol, Gregory Edgecombe of the Department of Earth Sciences at the Natural History Museum, and Davide Pisani, once again of the School of Biological Sciences and School of Earth Sciences at the University of Bristol, present the results of a study in which they estimate the divergence time of Arachnids, using a method which previously recovered both Arachnida and Acari as monophyletic groups. To calibrate the molecular clock, Lozano-Fernandez et al. used a carefully selected and expanded set of 27 fossil constraints across the tree.
The molecular supermatrix used by Lozano-Fernandez et al. is composed of 89 species, 75 of them being Chelicerates, with 14 other Panarthropod species as outgroups. This matrix is a concatenation of 233 highly conserved and slow-evolving genes retrieved from transcriptomic data (45,939 amino acid positions and 78,1% complete). To evaluate the robustness of the results to an alternative topology, Lozano-Fernandez et al. also performed a divergencedate analysis in which Arachnida was non-monophyletic, with Xiphosura nested inside the Arachnids. The phylogenetic trees were inferred using PhyloBayes MPI v.4.1 under the site-heterogeneous CAT–GTR C 0 model of amino acid substitution. Convergence was assessed by running two independent Markov chains and using the bpcomp and tracecomp tools from PhyloBayes to monitor the maximum discrepancy in clade support (maxdiff), the effective sample size (effsize), and the relative difference in posterior mean estimates (rel_diff) for several key parameters and summary statistics of the model. We ran the analysis for 10 000 cycles and discarded as 'burn-in' the first 3000 generations.
Divergence time estimation was performed using PhyloBayes 3.3f (serial version). Lozano-Fernandez et al. compared the fit of alternative, autocorrelated and uncorrelated, relaxed molecular clock models generating ten different random splits replicates and performing cross-validation analyses. The tree was rooted on the Onychophora–Euarthropoda split. A set of 27 fossil calibrations and 1 node constrained by a maximum age was used. Lozano-Fernandez et al.imposed a soft maximum of 559 million years ago for the Onychophoran–Euarthropod split based on trace fossils in the White Sea/South Australian Ediacaran. This uses a radiometric date of 558 million years for strata at which body fossils such as Kimberella, a putative total-group Bilaterian Metazoan, occur. Metazoan trace fossils in the White Sea/South Australian Ediacaran indicate suitable preservation for Arthropod traces, were they present. Lozano-Fernandez et al. regard this to be a conservative soft maximum, as there is no body or trace fossil evidence for Arthropods in the Ediacaran. A minimum for the divergence of Onychophorans and Arthropods is set by the earliest Rusophycus traces (total-group Arthropoda), dated to a minimum of 528.8 million years ago. To allow the analysis to explore younger ages and prevent having posterior ages being much older than the fossil record, Lozano-Fernandez et al. also set maximum constraints on a few of the deepest calibrations within Euarthropoda. Lozano-Fernandez et al. infer that crown-group Mandibulata and Chelicerata do not predate the oldest fossil evidence for Arthropods (Rusophycus) and set soft maxima for each of this pair of sister taxa at the base of the Cambrian (538.8 million yars ago). Within Arachnida, Lozano-Fernandez et al. infer Acari and Arachnopulmonata do not predate the oldest body fossils of crown-group Chelicerata, using Wisangocaris barbarahardyae and its date of 509 million years old as a soft maximum. The amino acid substitution model used to estimate branch lengths was the CAT–GTR C 0 model.All analyses were conducted using soft bounds with 5% of the probability mass outside the calibration interval. A birth–death model was used to define prior node ages. Analyses were run under the priors to evaluate the effective joint priors induced by our choice of calibrations and root maxima. Convergence was considered achieved with tracecomp statistics dropping below 1 for all relative difference scores, and all effective sample sizes being above 50, for all chain parameters. The time-scaled phylogenies were plotted using the package MCMCtreeR, which allows the display of full posterior distributions on nodes and the inclusion of the geological timescale. We included as supplementary data the chronograms, the guiding trees and the calibration file used in PhyloBayes, the subset of sampled timescaled trees used to generate the posterior distributions shown on the figures.
Lozano-Fernandez et al. estimated rates of molecular evolution within Chelicerata using two different methods. For the first method, they modeled the rates of molecular evolution on a fixed tree topology constrained to the timetree relationships. On this tree they estimated relative branch lengths under the C60 model C 0 in IQTree. Lozano-Fernandez et al. then divided these relative branch lengths by the timetree lengths to provide an estimate of absolute molecular rates through time. For the second method, they inferred ancestral estimates of the amino acid sequence on the fixed timetree, again using the C60 model C 0 in IQTree. Lozano-Fernandez et al. divided the sum of gross amino acid changes between ancestral and descendant nodes by absolute time to obtain per-branch rates of change.
Lozano-Fernandez et al. estimated speciation and extinction rates on the fixed timetree by using a Bayesian episodic diversification rate model in RevBayes 1.0.10. This model estimates piece-wise rates of speciation and extinction on a phylogeny through time. Within each bin, rates of speciation are equal but can differ between bins. The initial episodic speciation and extinction rate was sampled from a log-uniform distribution U(-10,10). Moving backward in time for each distinct time bin, the model samples speciation and extinction rate from a normal distribution with the mean inherited from the value of the previous bin so rates are autocorrelated. Each normal distribution has a standard deviation inferred from an exponential hyper-prior of mean 1. In this manner, the model follows a Brownian motion pattern of rate change through time. To incorporate incomplete sampling in the model, we provided estimates of the known extant species numbers to complement the diversity shown in the tree using empirical taxon sampling by providing estimate diversity represented by each tip on our incomplete time tree. This empirical taxon-sampling approach is believed to produce less biased estimates of speciation and extinction parameters compared to diversified taxon sampling. Lozano-Fernandez et al. used values of the described extant species: Pycnogonida (1346); Xiphosura (4); Ricinulei (77); Opiliones (6571); Solifugae (1116); Acariformes (42233); Parasitiformes (12385); Pseudoscorpiones (3574); Scorpiones (2109); Uropygi (119); Amblypygi (172); and Araneae (44863). As Lozano-Fernandez et al. tested for the presence of early high rates compared to later times rather than differences in geological time units. Lozano-Fernandez et al. assumed there were 10 equally sized time intervals which can potentially possess distinct speciation and extinction rates.
In the topology tree used for the molecular clock analyses by Lozano-Fernandez et al. Chelicerata and Euchelicerata are monophyletic, with the Horseshoe Crabs retrieved as the sister group of monophyletic Arachnida. Bayesian cross-validation indicates that the autocorrelated CIR model most optimally fits the data. Accordingly, divergence time estimation was performed using the Autocorrelated CIR model.
The age of the Euarthropoda root, given the taxonomic sample, is recovered near the end of the Ediacaran, 546 million years ago, with the 95% highest posterior density lying between 551 and 536 million years ago. Chelicerata are inferred to originate at 535 million years ago (with highest posterior density 540–527 million years ago), similar to the age retrieved for Mandibulata 535 million years ago (539–526 million years ago). The origin of Myriapoda comprises ages centered on the early Cambrian 516 million years ago (524–505 million years ago) and precedes that of Pancrustacea at 486 million years ago (501–471 million years ago). Hexapods are inferred to be much younger in age than Myriapods, ranging through the Late Ordovician to Early Devonian, 422 million years ago (448–400 million years ago).
Arachnid terrestrialisation is inferred to date to the Cambrian to Ordovician, crown-group Arachnida having a mean at 485 million years ago (494–475 million years ago). Therefore, Lozano-Fernandez et al.'s results support a Cambrian or Early Ordovician origin of two of the three main terrestrial Arthropod lineages (Myriapods and Arachnids). The upper limit is consistent with fossil evidence for stem-group Arachnida (Chasmataspidid trackways) but is substantially older than any crown-group fossils. Within Arachnida, rapid cladogenesis then occurred during the 20 million years that followed their origin, with several crown-group supra-ordinal clades becoming established in this time interval. By around 450 million years ago, all 10 stem groups leading to extant orders of Chelicerates included in the analysis (out of 12 in total, Palpigrada and Schizomida are unsampled) were already established. Further cladogenesis is inferred to have involved a more gradual tempo of evolution, in particular for Arachnopulmonata and Acari, which originated at 470 million years ago but greatly expanded after the start of the Mesozoic (252 Ma to 66 million years ago). Lozano-Fernandez et al.'s dating suggests that the oldest crown-group Arachnid orders are Opiliones and Parasitiformes, with Silurian and Devonian origins, respectively. Crown-group Scorpions have a Devonian to Carboniferous origin, with the sampled extant lineages splitting more recently. For Araneae, the crown-group age is centered on the Devonian–Carboniferous boundary, with most extant Mygalomorph and Araneomorph lineages diversifying after the Jurassic.
In general, these Palaeozoic age estimates for deep nodes within the most intensely sampled Arachnid orders are similar to those inferred in other recent molecular dating analyses. For example, Lozano-Fernandez et al.'s estimates for crown-group Araneae is consistent with the Late Devonian or Early Carboniferous dates retrieved in other transcriptome-based analyses; likewise, a Carboniferous mean age for crown-group Opistothele Spiders is found in each of these studies. Lozano-Fernandez et al.'s estimates encompassing a Late Ordovician median age for crown-group Opiliones corresponds to that estimated using tip dating, whereas node calibration in that study recovered a Silurian median. In the case of Scorpiones, a Late Devonian to Carboniferous origin of the crown group is closely comparable to the date for the same node, but older than the strictly Carboniferous ages estimated by a previous study. However, in all cases mentioned the credibility intervals substantially overlap, indicating that these independent studies found results that, despite some differences, are not significantly different and corroborate each other. One exception is from a recent phylotranscriptomic study of Pseudoscorpiones, which retrieved an Ordovician to Carboniferous origin for the group, significantly older than the Permian ages retrieved by Lozano-Fernandez et al. This may reflect the much more complete taxonomic coverage of Pseudoscorpion diversity in that study.
Electrochelifer balticus, a Pseudoscorpion from Eocene Baltic Amber. Scale bar is 1 mm. Harms & Dunlop (2017).
To assess whether our joint prior assumptions were driving their posterior estimates, Lozano-Fernandez et al. also ran the analysis under the priors (i.e. they performed analyses without data) and found that the joint priors allowed a wide possible distribution of ages, for the most part encompassing but not enforcing the posteriors. Lozano-Fernandez et al. also performed a molecular clock analysis from a different matrix that resulted in a topology in which Xiphosura was nested within Arachnida, specifically as the sister group of Arachnopulmonata plus Pseudoscorpiones. Overall, the result it is in general agreement with the main analysis, with most significant discrepancies concerning the age of Pycnogonida, which encompasses Silurian to Devonian ages, whereas in the main analysis are centered on the Carboniferous.
Lozano-Fernandez et al. conducted estimations of molecular evolution and diversification rates based on their Chelicerate timetree in an attempt to clarify whether the explosive cladogenesis at the onset of the Arachnid radiation early in the Phanerozoic was matched by an increase in either of these rates. The analyses of rates of molecular evolution along the branches show a very high rate early in Chelicerate history, including at the origin of Euchelicerata. These rates remain high during the early radiation of the Arachnida until the end of the Cambrian. Molecular rate estimations using branch lengths or ancestral sequences under a non-clock model gave nearly identical results. Using the episodic model of speciation and extinction rates through time, Lozano-Fernandez et al. found no evidence of high rates of speciation during the Cambrian, the period that presents the highest rates of molecular evolution. Instead, there is evidence for higher rates of cladogenesis later, bracketed between the Permian and Early Cretaceous, but especially high in the Permian and Triassic.
Molecular clocks allow the reconstruction of evolutionary timescales, but the reliability of these timescales depends on a variety of assumptions, which includes fossil data that have robust stratigraphic and phylogenetic justification, the use of a robust phylogenetic framework for the extant taxa, and the use of well-fitting models of both amino acid substitution and change in rate of molecular evolution. In this context, fossil calibrations then provide minimum ages for the origin of crown groups. Lozano-Fernandez et al. report divergence times on a well-sampled phylogeny, using the best-fitting molecular substitution and relaxed molecular clock models Fernandez et al. therefore contend that their findings provide the currently most robust insights into early Chelicerate evolution. In Fernandez et al.'s analysis, the ancestral Pycnogonid divergence from Euchelicerata is inferred to have happened early in the Cambrian. This does not greatly predate the oldest unequivocal total-group Pycnogonid, Cambropycnogon klausmuelleri, from the late Cambrian Orsten Konservat-Lagerstätte. The from the late Cambrian Orsten Konservat-Lagerstätte. The Pycnogonid–Euchelicerate divergence date suggests cryptic evolution of the Euchelicerate stem group in the early Cambrian. Chelicerate, and, indeed, Arthropod, body fossils are lacking in the earliest Cambrian, the Fortunian, the Arthropod fossil record in the first 20 million years of the Cambrian being limited to trace fossils. Subsequently, it is estimated that Xiphosurids diverged from Arachnids in the late Cambrian, followed soon after by the radiation of crown-group Arachnida. While revising this paper, a new study on Spider fossil calibrations came out and suggests that a few of the shallower calibrations used within Araneae treated as crown-groups may instead be stem-groups, so Fernandez et al. add this caveat when interpreting the age of Spiders.
There remain major geochronological discrepancies between the inferred molecular and fossil age of the various terrestrial Arthropod groups. While these discrepancies may be thought to question the accuracy of molecular clocks, the differences need to account for pervasive biases in the terrestrial sedimentary rock record. It has been noted that in Euramerica (from which much of the data on early terrestrial arthropods and early Plant megafossils are derived), terrestrial sediments are rare before the late Silurian, and first become widespread in the Early Devonian. This temporal bias in the rock record almost certainly affects the fossil records of terrestrial organisms, and likely accounts for a major component of the discordance between molecular and fossil dates. The common recovery of Horseshoe Crabs as ingroup Arachnids is perhaps unsurprising, given the short molecular branch lengths among these nodes in the tree, which also suggest short divergence times. With a reasonably good Xiphosurid and Pycnogonid fossil record, the molecular clock is well constrained among Euchelicerates. This is evidenced by the short credibility intervals among deep Arachnid nodes.
From an ecological context, it has been suggested that appreciably complex terrestrial ecosystems may have existed as far back as 1 billion years ago, with molecular dating suggesting that crown-group land plants were already present by the middle Cambrian. If it is indeed the case that Myriapods and Arachnids were on land so early, we speculate that the Animals may have been early grazers on littoral bacterial mats, or predated on other amphibious or terrestrial organisms. These ecologies represent habitats highly unfavorable to fossilisation, such as high-energy environments characterized by erosion rather than deposition. It is unsurprising that paleontological insight is thus limited, and inference of the
molecular kind as used here becomes more important as an investigative tool.
Fernandez et al. estimate that Arachnids colonised the land near the Cambrian–Ordovician boundary, and diversified soon after. Rates of molecular evolution were high at the onset of Arachnida, coinciding with rapid cladogenesis. High rates are concentrated on the branches leading to the major clades within Arachnida, representing major morphological and ecological partitions within the group. In unusually large and ancient clades, such as Chelicerates, it is expected to find high rates of molecular evolution in their early lineages and Fernandez et al. retrieved results in agreement with that expectation. In order to avoid biases related to that fact, they imposed on the molecular clock analyses several maxima on the deepest nodes to account for possible overestimations of divergence times. Arachnids are predominantly predators, which must reflect the presence of an already diverse ecosystem, which the slightly older divergence times for Myriapods and Embryophytes established in the middle Cambrian. Fernandez et al. therefore suspect that Arachnids primitively represent carnivorous Arthropods rather than having adapted to this mode of life convergently several times. The carnivorous Centipede (Chilopoda) crown group is separated from other Myriapods by a long branch estimated to be much younger in age than the detritivorous and/or fungal-feeding Progoneate Myriapods, allowing Arachnids to be potentially the first carnivorous Animals on land with early Myriapod lineages as a likely source of prey. Hexapod divergence estimates are generally younger, suggesting a colonisation of land no earlier than the Ordovician.
Mesoproctus rowlandi, a Whip Scorpion from the Cretaceous Santana Formation of Brazil. Scale bar is 1 cm. Dunlop (1998).
There is a clear contrast in evolutionary tempo after the explosive radiation of the Cambrian and Ordovician. More gradual cladogenesis characterises later Phanerozoic macroevolutionary dynamics of Chelicerates, as is seen in the origins of ordinal clades. Fernandez et al. 's diversification studies reveal an increase in speciation rates bracketed between the Permian and the Early Cretaceous, in the origin of most sub-ordinal clades, with no evidence of higher speciation rates coinciding with the early rapid Arachnid cladogenesis. A heightened diversification of Spiders during the Cretaceous has previously been detected, suggested to result from the rise of Angiosperms, stimulated by a warmer climate that led to the proliferation of Spiders’ main prey, Insects. Interestingly, Fernandez et al. did not observe an early burst of diversification at the origin of Chelicerates followed by a slowdown toward the present, a statistical bias usually found in large clades that survive to the present, the so-called 'push of the past'. Instead, it seems that speciation rates are decoupled from the rates of molecular change. The common origin of Arachnids giving rise to a plethora of adaptations, together with high molecular rates on the short internodes at the origin of the group suggests an ancient adaptive radiation shortly after colonising the land, but our diversification analyses have not detected higher speciation rates at that time, one of the key features signaling an adaptive radiation. Fernandez et al. acknowledge that the taxon sampling may not be the most adequate to infer speciation rates, as it was originally designed to maximize diversity, particularly at the deepest nodes to resolve the splits at the ordinal level.
Fernandez et al.'s analysis corroborates euchelicerates having radiated in the Cambrian and Arachnids having diversified rapidly in the latest Cambrian–Early Ordovician. While this radiation was rather fast, Fernandez et al. found no evidence that the speciation rates that underpinned it were explosive. The late Cambrian to Early Ordovician emergence of Arachnid stem groups onto land was soon followed by a rapid radiation near that same geological boundary, cladogenesis coinciding with high rates of molecular evolution during that time. A later phase of diversification within Arachnida is detected between the Permian and Early Cretaceous, during which the living arachnid orders exhibit heightened rates of speciation.
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