Showing posts with label Pliocene. Show all posts
Showing posts with label Pliocene. Show all posts

Thursday, 18 June 2026

An alternative hypothesis on the origin of Hominins and African Apes.

The ancestors of Humans are commonly thought to have evolved on the savannas of Africa, a theory which was originally proposed by Charles Darwin. This original proposition was based upon the fact that our closest ancestors, the African Apes, lived in the forests of Africa, and that our upright walking behaviour seemed like an adaption to open grasslands, rather than any fossil evidence available at the time. This is a plausible hypothesis, and much subsequent palaeoarchaeological evidence uncovered in Africa has appeared to support it. However, a number of recent discoveries have been hard to reconcile with this scenario, leading to the emergence of alternative ideas on Human origins.

There are a number of things about Human anatomy which appear to be inconsistent with an origin on the African Savannas. We have a furless body, a layer of subcutaneous white fat, feet much flatter than other primates, run slowly, and sweat heavily when hot or exercising, leading to the loss of fluids and minerals (our water consumption needs are high compared to other Primates even when not doing this).

For a long time it was hypothesised that knuckle-walking African forest Apes migrated onto the open grasslands, where they evolved into upright Australophithecenes, and subsequently into Humans. Over time, this theory has been modified as we have come to understand more about the environments favoured by Australopithecenes, they are now seen as inhabitants of mosaic woodlands who moved from a partially bipedal lifestyle to an obligate bipedal one to facilitate crossing more open areas, although why this should be the case remains unclear.

Another puzzle is the apparent absence of fossils ascribed to either the genera Pan (Chimpanzees) or Gorilla, despite the long lineage of fossil Human-ancestors dating back into the Pliocene. The genera Australopithecus, Paranthropus, Sahelanthropus, Orrorin, and Ardipithecus, have all been classified as Hominins, more closely related to modern Humans than either Pan or Gorilla. This is in contradiction to what would be expected, as genetic studies suggest modern Chimpanzee and Gorilla populations have diverged from large ancestral populations, while Humans apparently descend from a lineage with consistently small population sizes and repeated genetic bottlenecks. It has been suggested that this has come about because the ancestors of Chimpanzees and Gorillas lived in acidic forests, where there is lower potential for remains to become fossilised. However, this environment is more favoured by Orangutans, which do have a fossil record, than it is by Chimpanzees, which do not.

'Mrs Ples' a 2.1 million-year-old skull assigned to the species Australopithecus africanus in the collection of the Ditsong National Museum of Natural HistoryJosé Braga/Didier Descouens/Wikimedia Commons.

In a review article published in the journal Academia Biology on 10 June 2026, Marc Verhaegen of the Anthropology Study Center in Putte, Belgium, Stephen Munro of the National Museum of AustraliaKathelijne Bonne of GondwanaTalks in Madrid, Spain, Frances Mansfield, an independent researcher from Volos in Greece, and Mario Vaneechoutte of the Faculty of Medicine and Health Sciences at Ghent University, present a new hypothesis on the origins of both Humans and African Apes, in which they argue that the Australopithecenes were not, in fact the ancestors of Humans but rather of modern Gorillas and Chimpanzees. 

Verhaegen et al. not that genomic studies have found that the ancestors of modern Gorillas and Chimpanzees were infected with the Endoretroviruses PtERV1 (CERV1) and PtERV2 (CERV2) between 3 and 4 million years ago (Endoretroviruses are fragments of ancient viral DNA which have been inserted into the hosts genome), but Humans and Asian Apes show no signs of any such infections in their past. Since Humans are not immune to the effects of these Viruses, the most likely explanation is that our ancestors were geographically isolated from the epidemic. It has been suggested that Human ancestors may have moved out of Africa during much of the Miocene Epoch, when the Viruses were circulating, but Verhaegen et al. suggest that a more likely scenario is that they did not arrive in Africa at all until the Early Pleistocene. Few, if any, Animals are thought to have migrated from Africa to Europe during the Pliocene, while a range of European Animals migrated into Africa, driven by the hyper-arid climate that emerged in southern Europe at this time. 

Furthermore, Verhaegen et al. consider that the Australopithecines found in Africa during the Pliocene were not closely related to modern Humans, but rather that their smaller brains, short legs, and long arms indicate that they were related, or even ancestral, to modern African Apes. The evolution of Australopithecenes has often been seen as confusing, as earlier species often have more Human-like traits, seen as 'advanced', while later forms are often more Ape-like, or 'primitive', leading to speculation about undiscovered ghost lineages connecting earlier species to Humans. 

This distinction vanishes if Australopithecines are considered to be the ancestors of African Apes. For example, the Miocene Ardipithecus ramidus, which lived about 4.4 million years ago, had small canine teeth, similar to those seen in modern Humans, whereas the Pliocene Australopithecus africanus had much larger canines, comparable to a modern Ape. Other examples are the Miocene Orrorin tugenensis, which lived about 6 million years ago, had femurs more closely resembling those of Humans that any Pliocene Australopithecene, and the Early Pliocene Australopithecus anamensis, which lived about 4.2 million years ago, had a modified talar trochlea which would have enabled it to swing its leg forward during upright locomotion, something which is absent in subsequent members of the genus. Furthermore, later Austalopithecenes such as the Early Pleistocene Australopithecus sediba, which lived about 1.8 million years ago, appear better adapted to an arboreal lifestyle than earlier members of the group.

A cast of a skull of Ardipithecus ramidus from the Miocene of Ethiopia, in the collection of the Royal Tyrrell MuseumChris Woodrich/Wikimedia Commons.

Other than an early adaptation to bipedalism, Verhaegen et al. see Australopithecenes as consistently more Ape-like than they are Human-like, in particular noting that Australopithecus afarensis appears more Gorilla-like and Australopithecus africanus appears more Chimpanzee-like.

Verhaegen et al. do not see Homo habilis, the smallest and earliest member of the genus Homo, which appeared in the Early Pleistocene, about 2.58 million years ago, to be a true member of the genus Homo, noting that the species shares a small brain, short leg, and long arm morphology with Australopithecenes and Apes, and in particular that the morphology of the enamel–dentine junction in this species is also more Australopithecene-like. The later, but equally small, Homo naledi is also considered to be an Australopithecene. 

In Verhaegen et al.'s view, the last common ancestor of all Australopithecenes, living Apes, and Humans, would have been an upright Miocene Ape, capable of bipedal locomotion, climbing trees, and wading in shallow water. They describe a scenario in which these Apes led a lifestyle they describe as 'aquaborealism', living in forests which were at least seasonally flooded, with a lifestyle which involved wading in waters on the forest floor, climbing trees in a vertical position, and swinging beneath branches (branchiating). From this ancestral state the Hyobatids (Gibbons and Siamangs) evolved into small, fast branchiating Apes living in the tree canopy, Orangutans into larger, slower, branchiating forms, Gorillas and Chimpanzees (separately) into knuckle-walking forms, and Humans into bipedal walkers.

They give two potential scenarios from which modern African Apes could descend from Australopithecenes; either Chimpanzees descended directly from earlier, more gracile Australopithecenes, such as Australopithecus afarensis and Australopithecus africanus, while Gorillas arose from later, more robust forms such as Paranthropus boisei and Paranthropus robustus, or they went through separate but parallel evolutionary paths, running something like Australopithecus africanus-Paranthropus robustus-Chimpanzees and Australopithecus afarensis-Paranthropus boisei-Gorillas, in response to similar environmental changes.

A skull reconstruction assigned to Paranthropus robustus in the collection of the National Natural History Museum of China. Erlend Bjørtvedt/Wikimedia Commons.

Verhaegen et al. believe that the view of the common ancestor of Apes and Humans as being Ape-like, and Apes therefore as the 'primitive' state, has distorted our view of Hominid evolution for over a century. They argue that while Australopithecenes do have some Human-like traits, these are indicators that Australopithecenes are ancestral to Humans, but rather that they share some traits derived from a mutual common ancestor that frequently adopted an upright bipedal posture as an adaptation to life in flooded forests. 

The analysis presented by Verhaegen et al. suggests two distinct phases of Human evolution associated with wet environments; an initial aquaboreal phase in flooded Miocene forests, followed by a littoral (beach dwelling) phase, which may have involved frequent shallow diving to access food, which probably continued into the Early Pleistocene.

Apes differ from Old World Monkeys in a number of ways, the most obvious of which is their much larger size. This appears likely to have been a trait found in the last common ancestor of all Apes; even the relatively small Hylobatids are thought to have evolved from a larger ancestor, due to their long gestation period, which is unusual in such a small Primate, and is thought to be a hangover from a larger ancestor. Another notable trait is the absence of a tail in Apes. This has become much reduced, and forms a part of the 'pelvic cup'; a modification of the pelvis which helps to support the intestines when in an upright position. There is no comparable tail loss in any other Primate to which this can be compared, but the idea that this was an adaptation to an upright posture while engaged in vertical climbing and branchiating seems reasonable. Furthermore, if these ancestral Apes were spending a lot of time in wading in water, then a tail might have been disadvantageous, prone to heat loss, adding to the friction of the Apes when moving through the water, and prone to infections or attacks by predators. 

Verhaegen et al. note that quadruped Animals returning to the water tend to evolve in one of two ways. Those that use spinal flexation as the main means of propulsion and the tail as the driving organ, such as Whales and Sirenians, tend to lose their hind limbs, whereas those that use their limbs for propulsion, such as Seals, Bears, Penguins, and Hippos, tend to lose their tails. An exception can be seen in Animals such as Otters and Beavers, which use their tails for propulsion but make extensive use of their limbs for foraging and movement on land. Apes, which use their limbs to swim when they enter the water, have lost their tails.

The lumbar spine of Apes is stiffer and further from their dorsal surface than is the case in most Mammals, and their forelimbs (arms) are notably long, adaptations which seems favourable to climbing in an upright position and hanging below branches. They also have wide hips compared to other Primates, and a flatter pelvis, facilitating lateral leg movements, as well as a broader sternum and thorax, which pushes their scapulas into a more dorsal position, facilitating lateral and upward arm movements. 

Fossils of Miocene Apes are often found in what have been interpreted as warm, wet, forest environments, which has led to the suggestion that they may have been aquaborreal in nature, spending their time wading through flooded forests or climbing in the branches above with their arms. Such behaviour is known in extant Apes, for example Gorillas have been observed entering forest swamps to forage for Sedges, Bonobos will wade through water to obtain Waterlilies, and Orangutans have been observed wading in shallow water in Borneo.

Bipedal Gorilla, wading. Female Gorilla with a walking stick, while crossing bipedally an Elephant pool at Mbeli Bai, Republic of Congo. Thomas Breuer & Emma Stokes in Verhaegen et al. (2011).

Verhaegen et al. propose that all modern Apes derived from this initial aquaboreal Miocene Ape, with Gibbons adopting a fast branchiating motion, Orangutans a slower branchiating movement combined with knuckle walking, Gorillas and Chimpanzees separately developing a knuckle walking gait, and the ancestors of Humans going through a distinct litoral (coast dwelling) phase.

A number of lines of evidence have pointed towards Early Pleistocene members of the genus Homo may have engaged in regular wading, swimming, and even diving. Homo erectus has been observed to have a pachyosteoscletotic skeleton (i.e. unusually dense bones), something associated with slow-moving, shallow-diving Tetrapods such as Sireneans, as well as the earliest Whales and Seals. The dense skeleton can help such Animals maintain their position in the water, particularly in saltwater environments (where the body is more buoyant). The occipital bones of Homo erectus are roughly twice as thick as those of comparably sized Apes, making the interpretation of the species as a swift bipedal predator chasing down prey hard to sustain. 

Furthermore, the low positioning of the braincase, receding forehead, absence of a chin, and forward projecting face of Homo eructus appear to be an adaptation to frequent shallow water diving, and possibly floating on their backs. The forward pointing face and paranasal sinuses of Homo eructus may indicate a habit of surfacing nose first, with the nostrils above water and the heavy occipital area at the back of the head beneath the water, something which would have worked well in a back-floating position. The basicranial flexation of modern Humans holds our face in a ventral, forward facing position. In contrast, Homo erectus would have tended to look upwards, in what would be a forward position when swimming or diving (Neanderthals are somewhere between these positions). This has been suggested to be an adaptation to foraging in coastal waters, where the easy availability of coastal food sources would compensate for the lack of stability associated with a bipedal gait on land.

Several skulls of Homo erectus have been shown to have bony growths in the inner ear called aural exotoses (or surfer's ear) which is caused by chronic exposure to cold water. This has also been observed in about half of all Neanderthals. Verhaegen et al. observe that this directly contradicts the frequent claim that there is no direct palaeontological support for the coastal Ape hypothesis.

At the same time, Human-ancestors underwent both an increase in both overall body size, and relative brain size. This is a common adaptation to moving from a terrestrial to an aquatic lifestyle, seen for example in Whales and Dolphins, but is not typical when non-aquatic Mammals increase in size; for example, the largest Apes, Gorillas, do not have relatively large brains. Homo erectus underwent a significant increase in brain size, with later specimens had a brain twice as large as that of an equivalent-sized Ape. This may have benefited from the higher proportion of nutrients such as docosahexaenoic acid, folic acid, selenium, taurine, and iodine, in aquatic-derived foods, all of which are needed for brain-growth. Such disproportionate brain growth is not seen in terrestrial carnivores, and therefore seems unlikely in a Hominin chasing prey in open grassland. Notably, Australopithicenes never showed any notable increase in brain size over their two-million-year history. Verhaegen et al. take this as evidence that early Homo did not evolve from such ancestors on the African grasslands, since there seems no good reason that our brains should have started to grow rapidly while remaining in the same environment.

There is also considerable evidence that Homo erectus did consume aquatic foods. Fossils of Homo erectus from Mojokerto on Java were found in association with numerous marine Bivalve shells, while those at Trinil on the same island, were found with the shells of  freshwater Bivalves, such as Pseudodon and Elongaria, including specimens engraved with geometric patterns. Furthermore, palaeoarchaeological remains from the Koobi Fora Formation in the Turkana Basin of northern Kenya have yielded stone tools from a Oldowan technology alongside the remains of aquatic Animals including Fish, Turtles, and even Crocodiles. Early Homo specimens from a variety of locations have dental wear associated with grit and the oral processing of marine Molluscs. Archaic members of the genus Homo are known to have reached Sulawesi by one million years ago, despite this island never being connected to the Eurasian mainland, suggesting an early ability to cross open water.

Pseudodon shell with geometric engravings from the Trinil archaeological site in East Java, dated to about 500 000 years ago. The shell was excavated by Dutch palaeoarchaeologist Eugène Dubois in the 1880s and taken to the Netherlands. It was returned to Indonesia by the Naturalis Biodiversity Center in 2025. Naturalis Biodiversity Center/Wikimedia Commons.

The genus Homo first appeared around the beginning of the Pleistocene, with the first evidence of the consumption of aquatic foodstuffs appearing about two million years ago, across the tropical and temperate regions of the Old World. This has led to the suggestion that Homo was able to spread across this area rapidly by following coasts and rivers, wading and diving for food. There is also increasing evidence for the consumption of aquatic foods by Neanderthals across their range, as well as Modern Humans across the world, and from their earliest appearance. 

Humans differentiate from the standard morphology and physiology of Primates, and indeed terrestrial Mammals in general, in several ways. We have fleshy outward lips, a small oral opening, a closed tooth row, a more globular tongue, a descended larynx, and an external nose that still today some individuals can partially close, using nasal muscles. We also have a distinct 'Cupid's bow' to our upper lips (technically the philtrum) to our upper lips, another feature which some modern individuals can use to close their nasal airway. All of these are adaptations which enable us to regulate breathing and seal our airways better, and which may have been more pronounced in Homo erectus.

Feeding on shellfish would also have required adaptations which required improved abilities to control the sucking and swallowing of food, particularly if this was done in the water. Adaptations which improved fine control over the lips, jaw, tongue, glottis, and larynx, would also have acted as pre-adaptations for the later evolution of speech. Hunting for foodstuffs underwater, particularly if we were doing this blind (by touch alone) is also likely to have improved both our manual dexterity and the sense of touch in our fingers, something also seen in Raccoons and Otters.

In Humans, the connective tissues, tendons, ligaments, and muscles of the human foot are aligned with the hallux to form a longitudinal arch. This is unlike the foot of any other Primate, and is a good adaption to walking, and acts as a shock-absorber when running. However, it is also a particularly good adaptation to swimming, particularly as our feet are relatively larger and more paddle-shaped, and makes us particularly sure-footed on wet or infirm terrain, where other Mammals often struggle. Humans are able to swim using axial undulation, a coordinated wave of motion from trunk to hips to legs, something other Primates are unable to do. Our feet can be seen as a trade-off between something useful for swimming and something useful on land. Notably, we are less efficient runners than most other Mammals, which directly contradicts the idea that we evolved to chase large prey across grasslands.

Notably, Humans have a layer of white fat beneath our skins (the adipose layer) considerably thicker than found in any other Primate, as well as an overall fat content which is also distinctively high. In a healthy male Human, between 12% and 23% of the body mass is fat, while in a female it is between 25% and 35%. In Chimpanzees and Bonobos body fat typically makes up less than 5% of the body mass of males, and less than 8% of the bodymass of females. Thus even the leanest of Humans have a significantly higher proportion of fat than healthy Chimpanzees. This suggests that Humans have undergone a significant ecological shift after our ancestors split from those of Chimpanzees, and one which decoupled the fat content of our bodies from the its use as an energy store. Such a change is again typical of aquatic and semi-aquatic Mammals, where fat has an important role both as an insulator and as a buoyancy aid. Such a layer provides no particular role during activities such as sustained running, and may be disadvantageous, as it can hamper the dissipation of heat.

Verhaegen et al. believe that plate tectonics played an important role in the evolution of Hominoids, Hominids, and Hominins, and in particular the formation of the Red Sea and the African Rift. Until about 30 million years ago (Early Oligocene), Africa and Arabia were a single island continent, separated from Eurasia by the Tethys Ocean. Over time, this continent drifted northward, the Tethys Ocean narrowed, and a series of islands and archipelagos formed between the two continents.

Between about 30 million years ago and about 20 million years ago (during the Oligocene and Early Miocene), an episode of plume volcanism beneath the Afar Triangle led to uplift, basalt volcanism, and the formation of a triple junction rift system. The three branches of this rift would go on to form the Gulf of Aden to the east, the Red Sea to the northwest, and the Ethiopian Rift to the south. At this time Eurasia and Africa-Arabia were still separated, although the Mesopotamian Seaway, which separated Arabia from what would become Mesopotamia and Persia, was becoming increasingly narrow.

Between about 20 million years ago and about 14 million years ago (Early-Middle Miocene) the Mesopotamian Seaway slowly closed, leading to the formation of a connection called the Gomphotherium Landbridge (Gomphotherium being a type of early Elephant that migrated out of Africa across this landbridge), leading to faunal exchange between Africa-Arabia to the south and Eurasia to the north. forming the first wave of the 'Great Old World Biotic Interchange', while the Mediterranean Sea and Indian Ocean became isolated from one-another. This also led to uplift and mountain formation along the Bitlis-Zagros Suture Zone, and the development of the Dead Sea Transform and Aqaba faults in response to the added tectonic stress. At this time the Red Sea had opened, and was connected to the Mediterranean by by the Gulf of Suez, but a land bridge at Bab-al-Mandeb, connecting Arabia to Africa, separated it from the Gulf of Aden.

Between about 14 million years ago and about six million years ago (Late Miocene), movement on the Dead Sea Transform Fault, combined with the mass of sediments around the Nile Delta, closed off the connection between the Red Sea and the Mediterranean at the Gulf of Suez. Following this, the Red Sea underwent a desiccation crisis, drying up and leaving vast salt deposits, albeit with occasional marine incursions.

Between about 5.9 and 5.33 million years ago (latest Miocene), the Gulf of Gibraltar also closed, cutting off the inflow of water from the Atlantic to the Mediterranean, and triggering the Messinian Salinity Crisis, in which the Mediterranean largely dried up, leaving a vast and inhospitable salt plain. 

After about 5.33 million years ago (Pliocene), the straits of Bab-al-Mandeb opened up allowing the Red Sea to flood from the Gulf of Aden, and the Strait of Gibraltar reopened, allowing the Mediterranean to refill from the Atlantic (the Zanclean Megaflood). Around this time the Gulf of Suez reconnected to the Mediterranean, cutting off Africa from the Red Sea until the beginning of the Pleistocene, when a land bridge formed across the Sinai again.

Simplified tectonic and palaeogeographic evolution of the Mediterranean Sea and the Arabian Peninsula, with key marine connections between Africa, Arabia, and Eurasia (details of European and Paratethys geographies not given). (1) Before 30 million years ago (until the Rupelian, Oligocene); (2) 30–20 million years ago (Rupelian–Burdigalian); (3) 20–14 million years ago (Burdigalian–Langhian); (4) 14–6 million years ago; (5) From about 5.9 to 5.33 million years ago: the Strait of Gibraltar closed due to plate tectonics; (6) From 5.33 million years ago onwards. Red circle in (2): Afar plume basalt eruptions; brown line in (3): uplifting mountain front at the Bitlis-Zagros Suture Zone; red line in (3) and (4): active Dead Sea Transform Fault; pale orange in (4) and (5): desiccated marine domains; blue arrows in (6): marine gateways and direction of filling of basins. Verhaegen et al. (2026).

Verhaegen et al. suggest two alternative scenarios for the emergence of the first Apes. One scenario sees a group of Early Miocene Primates living in coastal forests and islands along the Mesopotamian Seaway, which gave rise to both the Apes and the Old World Monkeys. The other sees these ancestors living in coastal forests in East Africa, which migrated northward along the Red Sea Rift as it opened, migrating into the Arabian Peninsula and then eventually into Eurasia. This latter scenario is supported by the presence of the possible Ape Morotopithecus in Uganda about 20.6 million years ago, although the exact status of this fossil is unclear.

In either scenario, Early Apes increased in size rapidly after splitting from the Old World Monkeys, at the same time developing a very broad and strong sternum in a broad thorax, a somewhat shorter lumbar spine with only five lower and more centrally placed lumbar vertebrae (indicative of a vertical body posture), an enlarged sacrum equipped with a coccyx in a broad pelvis (cup form, supporting the intestines), external tail loss, relatively longer legs (indicative of wading), and longer arms (indicative of below-branch hanging). These early Apes are thought to have lived in (probably coastal) swamp forests, hanging beneath branches, practising aquarbourism, and developing to an upright bipedal stance. 

These early Apes probably spread along the northern coast of the Tethys Ocean, with different groups splitting off and going their own way, beginning with the Gibbons. Between 22.4 and 16 million years ago the ancestors of the Orangutans had split from those of the African Apes, moving eastward towards the coastal forests of Southeast Asia, while the proto-African Apes colonised forests along the Western Tethys (what would become the Mediterranean). 

There is a surprising absence of Ape or Hominid fossils from the Middle Miocene of Africa (between about 13 and 10 million years ago). At the same time, Eurasia has an abundance of both, particularly in southern Europe and Anatolia, with many forms looking like plausible ancestors for African Apes. Verhaegen et al. cite this as support for the idea that the ancestors of modern Humans and African Apes were not in Africa during this time, but instead in southwestern Eurasia. At this time much of southern Europe was covered by  inland seas, mega-lakes, swamps, and coastal forests, and home to Dryopithecine Apes such as Dryopithecus, Pierolapithecus, Danuvius, and Rudapithecus, which are potentially ancestral to modern Gorillas, Chimpanzees, and Humans.

A partial skull of Pierolapithecus catalaunicus, a Dryopithecine Ape from the Middle Miocene of Spain. Institut Català de Paleontologia Miquel Crusafont.

During the Vallesian Crisis (between about 11.6 and 8.7 million years ago) the climate of southern Europe became much drier and the extensive forests shrank, being replaced by open grasslands. Many of the Apes there died out, while surviving forms, such as Ouranopithecus and Graecopithecus adapted to the new environment by becoming more bipedal, and foraging in mixed woodlands and river valleys. These Apes could potentially be ancestral to later Australopithecenes and African Ape (one Turkish Ape from this period, Anadoluvius turkae, has been suggested as an offshoot from the line which led to Gorillas).

The scenario envisaged by Verhaegen et al. has a group of Dryopithecine Apes taking advantage of the closure of the Mesopotamian Sea, and migrating to the swamp forests surrounding the early Red Sea. The ancestors of Orangutans must have split from these western Apes before 14 million years ago, when the Badenian Transgression would have blocked migration between Europe and East Asia. The lineage which led to Gorillas probably split off next, migrating from Europe, where taxa such as Ouranopithecus remained, while closer ancestors such as Anadoluvius turkae migrated through Anatolia, and on to Africa, where they gave rise to Gorilla-like African Apes such as Chororapithecus and Sahelanthropus, then eventually the East African Australopithecenes and modern Gorillas.

At the same time, Graecopithecus and similar species around the Mediterranean could provide plausible ancestors for Chimpanzees and Humans, explaining the Hominid-like footprints seen at Trachilos on Crete about six millions of years ago (long before the earliest such footprints in Africa). The lineage which led to Humans and Chimpanzees must also have migrated southward, at latest during the onset of the Messinian Salinity Crisis about 5.9 million years ago, which would have made the Mediterranean Basin uninhabitable. The route from Europe into Africa across the Sinai Peninsula would have been cut off during the Zanclean Megaflood (5.33 million years ago), which filled the Mediterranean and over-spilled into the Red Sea, filling that too. The final connection between Arabia and Africa was lost about 5 million years ago, when the Bab-el-Mandeb Strait opened, connecting the Red Sea to the Gulf of Aden.

Verhaegen et al. suggest that some of these Apes crossed into Africa before 5 million years ago, giving rise to the Southern African Australopithecines and eventually modern Chimpanzees. Another group remained on the southern shore of Arabia, where they were forced to turn increasingly to the littoral environment for survival, as the land became increasingly arid and hostile.

Around 2.8 million years ago the Earth's climate cooled sharply, leading sealevels to drop abruptly. At this time early Homo migrated from Arabia into Africa and Eurasia, leading to the sudden appearance of Homo erectus across the Old World. 

A reconstruction of the skull of Homo erectus in the collection of the University of Michigan Museum of Natural History. Thomas Roche/Wikimedia Commons.

Under this scenario, the genus Homo is absent from Africa until the Early Pleistocene appearance of Homo erectus/Homo eregastor, with the Pliocene Australopithecines not being ancestral to Modern Humans, but instead relatives of Chimpanzees and Gorillas. This view is broadly in-line with several recent cladistic analyses of Human origins, which suggest African Apes and Humans are derived from Eurasian Apes, and that there were multiple crossings from Eurasia into Africa. 

Verhaegen et al. take the view that East and Southern African Australopitecines largely evolved in parallel, in response to similar ecological pressures. Thus the gracile forms, Australopithecus afarensis and Australopithecus africanus, appeared in the Pliocene, when they were able to live in forest, and in particular swamp forest, environments, whereas the more robust Early Pleistocene forms, Paranthropus boisei and Paranthropus robustus, evolved in response to cooler, drier conditions, although generally sticking close to large bodies of water, such as Papyrus swamps. Eventually the modern African Apes adopted to a life on dry forest floors.

It is possible that the Southern African Australopithecines were more omnivorous, whereas the East African forms adapted to the processing of tougher plant materials, something which is reflected in the diets of modern Chimpanzees and Gorillas. 

This later arrival of Human-ancestors into Africa provides an explanation for the absence of any trace of the Endoretroviruses PtERV1 (CERV1) and PtERV2 (CERV2) in our genomes, while the ancestors of Gorillas and Chimpanzees were affected. The potential littoral phase also explains the many morphological adaptations which set Humans apart from other Apes, as well as behavioural traits such as a fondness for water and sea coasts. 

Verhaegen et al. believe that the earliest members of the genus Homo were shelfish divers, something which would have provided them with the resources for accelerated brain growth, as well as adaptions such as an external nose and pachyosteosclerotic skeleton. As supporting evidence for this, they cite the frequent occurrence of ear exostoses (surfer's ear) in early Homo, as well as tooth wear associated with a shellfish diet, the early arrival of Homo on remote islands such as Flores and Sulawesi, and the co-occurrence of their fossils and tools with shells, and even engraved shells.

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Sunday, 24 August 2025

Hominin remains from the Late Pliocene of Ledi-Geraru, Ethiopia.

The genera Homo and Paranthropus are common in the fossil record from about 2.0 million years ago. Both are thought to have derived from an earlier Australopithecus ancestor, with the most likely ancestor for the genus Homo generally thought to be Australopithecus afarensis. However, Australopithecus afarensis is not known after 2.95 million years ago, with Hominid fossils being rare over the intervening interval, spanning the latest Pliocene and earliest Pleistocene. Examples of Paranthropus have recently been described from 2.7 million-year-old deposits in the Omo-Turkana Basin of Ethiopia and Nyayanga in Kenya, and the 2.66 million-year-old deposits at Laetoli in Tanzania, while a jawbone attributed to the genus Homo has been found at Ledi-Geraru in Ethiopia which has been dated to 2.78 million years ago, pushing the presence of both these 'Pleistocene' genera back into the latest Pliocene, while a new species of Australopithecus, Australopithecus garhi, has recently been described from 2.5 million-year-old (earliest Pleistocene) deposits in the Afar region of Ethiopia.

In a paper published in the journal Nature on 13 August 2025, a team of scientists led by Brian Villmoare of the Department of Anthropology at the University of Nevada Las Vegas describe a series of recent Hominin finds made by the Ledi-Geraru Research Project in the Afar Basin of Ethiopia.

The Ledi-Geraru sites are located at the northern end of the palaeoanthropological sites of the Afar Basin, and has produced the only known evidence of the genus Australopithecus surviving after 2.95 million years ago, as well as the earliest evidence for the appearance of the genus Homo. Paranthropus has not been found in this area, but it is unclear whether this represents a genuine absence. The two sites of Ledi-Geraru, Lee Adoyta and Asboli are to the west of the Awash River, in an area cut through by the Mille and Geraru rivers and their tributaries. The deposits here are between 2.5 and 3.0 million years old, and have been dated by Argon-Argon radioisotope stratigraphy of volcanic layers, as well as magnitostratigraphy.

Map of the Ledi-Geraru Research Project area. (a) The  Ledi-Geraru Research Project area (yellow star) is located towards the northern  extent of palaeontological sites (red circles) in the Afar depression, Afar Region,  Ethiopia. (b) Within the Ledi-Geraru project area, the Lee Adoyta and Asboli fossil  sites are located approximately 12.5 km apart. Villmoare et al. (2025).

Argon-Argon dating relies on determining the ratio of radioactive Argon⁴⁰ to non-radioactive Argon³⁹ within minerals from igneous or metamorphic rock (in this case volcanic ash) to determine how long ago the mineral cooled sufficiently to crystallise. The ratio of Argon⁴⁰ to Argon³⁹ is constant in the atmosphere, and this ratio will be preserved in a mineral at the time of crystallisation. No further Argon³⁹ will enter the mineral from this point, but Argon⁴⁰ is produced by the decay of radioactive Potassium⁴⁰, and increases in the mineral at a steady rate, providing a clock which can be used to date the mineral.

Magnitostratigraphy uses traces of ancient magnetic fields preserved in iron minerals in rocks to trace ancient pole reversals; the poles only have two possible orientations (north pole in the north/south pole in the south or south pole in the north/north pole in the south) and these occasionally flip, with the poles exchanging positions. Pole reversals happen more-or-less at random, with periods between reversals occurring at intervals ranching from tens of thousands to millions of years, and reflected across the globe. This creates a pattern of magnetic reversals in sedimentary rocks that can be matched in different rocks across the globe.

The first specimen described by Villmoare et al. comes from the Gurumaha Sedimentary Package, which outcrops in narrow fault-bounded exposures in the central Lee Adoyta basin and in drag-faulted blocks adjacent to basalt ridges  bounding the basin to the east. This sedimentary package is cut through by the Gurumaha Tuff, which has been dated to 2.782 million years before the present. This is the unit which previously produced specimen LD 350, a 2.78 million-year-old mandible which is the oldest fossil assigned to the genus Homo

The specimen derived from this unit, LD 302-23, is a third right lower premolar found 22 m to the southwest and 7 m bellow specimen LD 350, but still above the Gurumaha Tuff layer. This tooth measures 11.5 mm in length and 10.5 mm in width, and has a fragment of enamel missing from its lingual corner, being otherwise well-preserved. The shape of the premolar is consistent with that seen in some examples from Australopithecus afarensis, but the pattern of cusps is quite different to anything seen in any member of the genus, making it unlikely that this tooth came from an Australopithecus. It also falls within the size range of both species of Paranthropus, but is quite different in shape. Third premolars from early members of the genus Homo are quite variable, but clearly differ from both those of Australopithecus and Paranthropus. Since this tooth falls within the size and shape variation found in these early Homo specimens, Villmoare et al. assign it to the genus Homo

New Hominin dentition from the Ledi-Geraru Research project. Right, from top: LD 302-23 P₃,  LD 750 P₄, AS 100 M¹ and AS 100 M².  Left, images show the LD 760 assemblage  (top, from left: maxillary molar, I², I¹, maxillary canine; bottom, mandibular molars). Villmoare et al. (2025).

The second specimen described, LD 750-115670, is an isolated lower fourth premolar, found at the base of an 8 m exposure of fossiliferous mudstones and sandstones at site LD 750. This site is located stratigraphically between the 2.63 million-year-old Lee Adoyta Tuffs and the 2.59 million-year-old Giddi Sands Tuff. 

The tooth crown is unworn, with all cusps preserved, although the root is broken off, giving a maximum root height of about 2 mm. The lack of wear may imply that the tooth was unerupted at the time of death. The tooth is 12.4 mm long and 11.4 mm wide, placing it at the upper end of the size range for Australopithecus afarensis or Australopithecus africanus, and too large for Australopithecus anamensis. No lower jaw or teeth are known for Australopithecus garhi, but the specimen is within a plausible size range for the species. It also falls within the size range of both Paranthropus species, but again is quite different in shape. It does resemble several fourth premolars attributed to early Homo, though Villmoare et al. note that these attributions are provisional, and that it is difficult to distinguish between early Homo and Australopithecus fourth premolars. Since this tooth lacks any distinctively Homo features, Villmoare et al. provisionally assign it to aff. Australopithecus sp..

A set of five associated lower molars were discovered at a site identified as LD 760, a flat sandy area approximately below the 2.63 million-year-old Lee Adoyta Tuffs. These are worn, with dentine exposed on their outer cusps, and wide for their lengths, giving them a squarish profile. Notably, the third molar is larger than the second molar, and the second molar is larger than the first, the first and second molars a relatively square, and the first and second molars lack a seventh cusp, all traits compatible with Australopithecus afarensis, but not early Homo. However, these teeth also differ from those of Australopithecus afarensis in several ways; they do not taper towards the rear, and lack a distinctive bilobate buccal contour. 

LD 760 molars compared to Australopithecus afarensis. Left molars from Ledi-Geraru specimen LD 760 (left) and Hadar specimen A.L. 400-1 (right). Measurements in mm of the LD 760 molars (length × width): LM1: 13.3 × 13.4, LM2: 14.5 × 14.6, LM3: 14.0 (estimated) × 15.7, RM1: 13.2 × 13.1, RM2: 14.8 × 15.2. Specimens are oriented with their buccal surfaces to the left and mesial surfaces up. Villmoare et al. (2025).

A partial upper molar was also recovered from this locality. This preserves the lingual grove of the tooth, which appears to be quite distinct. In the upper molars of Australopithecus garhi this groove is indistinct. Furthermore, the upper molars of Australopithecus garhi has a greatly reduced hypercone cusp, which leads the protocone cusp to take on a triangular shape. The hypercone is absent in the LD 760 specimen, but the protocone is present, and shows no sign of modification due to a reduced hypercone. However, the sample size for Australopithecus gahri is small, so this cannot be ruled out as a natural variation within the species.

Also found at the LD760 site were a right maxillary (upper) canine, a complete left maxillary lateral incisor and a left fragmentary maxillary central incisor. Thecanine (LD 760-115979) is well  preserved, lacking only the tip of the root. This has mesial and distal interproximal contact facets (wear marks caused by contact between teeth), with the interproximal contact facet having a matching distal interproximal contact facet on the second incisor. This means that the second incisor and canine were in contact, something typical of the the genus Homo, and unlike the situation in many Australopithecus specimens (including the Australopithecus gahri maxilla BOU-VP-12/130) where these two teeth are separated by a diastema (this trait is variable in Australopithecus afarensis, which may-or-may not have a diastema, so this could conceivably also be the case in Australopithecus gahri). The canine is also notably large, towards the upper end of the size range seen in Australopithecus (and much larger than anything seen in Paranthropus).

Comparative maxillary canine morphology. (a) Lingual (left) and  labial (right) views of the Ledi-Geraru LD 760-115979 canine (left) with Hadar Australopithecus afarensis specimens A.L. 763-1 (middle) and A.L. 333x-3 (right). Note that the  LD 760 canine is a right canine, whereas the Australopithecus afarensis canines are from the  left and are mirrored in these images. (b)–(d) LD 760-115979 ((b) shown in lingual view) contrasted with Hadar Australopithecus afarensis specimen A.L. 199-1 ((c) right canine  shown; distal to the upper right) and Bouri Australopithecus garhi specimen BOU-VP-12/130  (d) left canine, mirrored; distal is to the right). Note the simple mesial–distal  chisel-like wear pattern on the LD 760 canine (b) in contrast to the complex  multi-faceted wear pattern of Australopithecus afarensis (c) and the broad curved basin on the  distal side of the Australopithecus garhi upper canine ((d) this is seen on both left and right  canines). Images are oriented differently to emphasise the distinctive relevant morphology. Images in (b)–(d) are not to scale. Vallmoare et al. (2025).

The canine of Australopithecus gahri has a unique structure, with a shallow distal basin reminiscent of a talon which is contiguous with a wide wear furrow which runs along the entire post-canine dental row, something not seen in any other Hominin, and absent in the LD 760 canine. Morphologically, this tooth resembles those of Australopithecus afarensis, however, it has different wear patterns. In Australopithecus afarensis wear is mostly seen on the distal crest, whereas in the the LD 760 canine it is predominantly on the apex, suggesting a difference in diet and/or lifestyle.

The LD 760 individual clearly does not belong to Paranthropus, and is not morphologically consistent with any described species of Australopithecus. However, since it resembles Australopithecus afarensis more closely than anything else, Vallmoare et al. refer it to Australopithecus sp. indet.

The final specimens discussed come from the Giddi Sands unit in the Asboli region. These were found immediately below the 2.593 million-year-old Giddi Sands Tuff, and comprise a partial upper left first molar, and two fragments of an upper left second molar, which can be assembled to form a whole crown. They show little wear, and are close in shape to those of Australopithecus afarensis, although they lack the pronounced lingual occlusocervical sloping and general 'puffy' appearance of the molars of that species. They closely resemble the molars of early Homo specimens such as the 2.3 million-year-old specimen from the Busidima Formation at Hadar, or the 2.5-2.4 million-year-old specimen from Mille-Logya. It is quite different in form from the molars of Australopithecus gahri, and is small compared to the molars of either Australopithecus gahri or Paranthropus

Vallmoare et al. believe that although the Ledi-Geraru material is very limited, it provides clear evidence that both Australopithecus and Homo were present during the 3.0-2.5 million years ago interval, suggesting that multiple non-robust Hominin lineages were present in East Africa before 2.5 million years ago. 

The molar fragments from Asboli sufficiently resemble the Homo specimens from Hadar and Mille-Logya that Vallmoare et al. are confident that they represent the same species. However, they predate the older of these specimens (Mille-Logya) by at least 150 000 years. This adds to the evidence for an early appearance of Homo as Ledi-Geraru previously established by the LD 350-1 mandible, as does the LD 302-23 premolar which Vallmoare et al. describe from the Gurumaha sedimentary package.

The LD 750 and LD 760 material both come from the Lee Adoyta sedimentary package, although they are separated by 24 m of strata and the 2.63 million-year-old Lee Adoyta Tuffs. Nevertheless, both appear to represent a single species of Australopithecus (an assumption based in part upon the unlikelyhood of two similar species of Austrlopithecus coexisting in the same area). 

Vallmoare et al. consider four potential explanations for this material. Firstly, they might represent a late surviving population of Australopithecus afarensis (approximately 350 000 younger than the current youngest member of the species, from the Kada Hadar 2 Submember at Hadar). Secondly, they may represent an unknown species of Australopithecus ancestral to Paranthropus; the presence of Homo in this region implies that the Homo and Paranthropus lineages had diversified by this time, but Paranthropus itself appears to be absent. However, the oldest currently accepted member of the genus coming from about 2.7 million years ago from Nyayanga in Kenya and 2.66 million years ago from the Upper Ndolanya Beds at Laetoli in Tanzania, which makes this scenario less likely. Thirdly, they may represent earlier examples of Australopithecus gahri, which have not yet developed the distinctive features of the 2.5 million-year-old specimen BOU-VP-12/130, although the lack of similarities makes this unlikely. Finally, these specimens represent a new, as yet undescribed, species of Australopithecus.

Villmoare et al. conclude that were at least three species of Hominins present in the Afar Region between 3.0 and 2.5 million years ago, Australopithecus gahri, an unknown species of Homo, and an unknown species of Australopithecus. At the same time, Australopithecus africanus was still present in South Africa, and Paranthropus had already appeared in Kenya, Tanzania, and southern Ethiopia. The Ledi-Geraru environment was drier and more open than was typical for Australopithecus, very much the sort of environment associated with appearance and proliferation of the genus Homo, suggesting that, at least locally, Australopithecus may have been able to adjust to these more open environments, at least for a while.

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Sunday, 7 April 2024

Ardenna buchananbrowni: A new species of diving Shearwater from the Pliocene of Taranaki, New Zealand.

Shearwaters, Procellariidae, are a diverse group of Tube-nosed Seabirds, Procellariiforms, with a fossil record going back to at least the Miocene (some Oligocene fossils have been assigned to the group - but the status of these is uncertain). All living and fossil Shearwaters are placed within three genera, the relatively large Calonectris, weighing 470–1060 g; the somewhat smaller Ardenna, weighing 320–950 g; and the notably smaller Puffinus, weighing 120–575 g (confusingly, Puffins are not Shearwaters at all, but members of the Auk family, Alcidae, with the generic name Fratercula). Shearwaters have a fairly good fossil record in the Northern Hemisphere, but until 2018 the known remains from the Southern Hemisphere comprised a few fragmentary bones from Mio-Pliocene assemblages in Chile, Peru, and South Africa. This changed with the discovery of Ardenna davealleni, a large gliding Shearwater from the Pliocene Taranaki Seabird Assemblage.

In a paper published in the journal Taxonomy on 6 April 2024, Alan Tennyson of the Museum of New Zealand Te Papa TongarewaRodrigo Salvador of the Arctic University Museum of NorwayBarbara Tomotani of the Department of Arctic and Marine Biology at the Arctic University of Norway, and Felix Marx, also of the Museum of New Zealand Te Papa Tongarewa, describe a second Pliocene Shearwater from the Taranaki Assemblage.

The new species is described from two specimens. The first of these, NMNZ S.49931, is a partial articulated skeleton, comprising a complete skull and premaxilla, posterior right mandible, sternum, furcula, right coracoid, a row of articulated thoracic vertebrae, four ribs, both humeri, right ulna, right radius, and several small unidentified fragments, which was collected from Ohawe Beach, southern Taranaki, by Karl Raubenheimer. The second specimen, NMNZ S.49666, is another partial skeleton, comprising a complete skull and premaxilla, left quadrate, right coracoid, both humeri (missing their distal ends), right ulna, probable right radius, one vertebra, and several small unidentified fragments, collected by John Buchanan-Brown at Waihi Beach, South Taranaki. The species is placed in the genus Ardenna, and given the specific name buchananbrowni, in honour of John Buchanan-Brown.

Pliocene fossil Shearwater Ardenna buchananbrowni. (Top) Photograph of holotype NMNZ S.49931 and (bottom) explanatory line drawing. Tennyson et al. (2024).

Ardenna buchananbrowni is a small Shearwater, falling within the upper part of the size range of the genus Puffinus, and its general shape falls within the range of both Puffinus and diving members of the genus Ardenna. However, it is closest in form to Ardenna tenuirostris, the living Short-tailed Shearwater or Muttonbird, leading Tennyson et al. to conclude that it was a small diving member of the genus Ardenna.

Pliocene fossil shearwater Ardenna buchananbrowni, paratype NMNZ S.49666, with elements identified. Tennyson et al. (2024).

The genera Ardenna and Puffinus are calculated to have diverged about 10.4 million years ago, based upon molecular clock data, with members of the genus Puffinus becoming specialised in diving, and some members of the genus Ardenna also later becoming specialist divers, and converging in form with Puffinus. The Taranaki Seabird Assemblage has been dated to between 3.36 and 3.06 million years before the present, making Ardenna buchananbrowni the oldest known diving Ardenna as well as the smallest, and demonstrating that members of the genus had adapted to a diving lifestyle in the Southern Ocean more than 3 million years ago.

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Monday, 1 May 2023

Macronectes tinae: A new species of Giant Petrel from the Pliocene of Taranaki, New Zealand.

Giant Petrels, Macronectes spp., are the largest members of the Avian Family Procellariidae, and are easily identifiable by their large size, heavyset body, and distinctive bulbous beak. The genus currently comprises two species, the Southern Giant Petrel, Macronectes giganteus, found on Antarctica and the southern tips of Australia, Africa, and South America, and the Northern Giant Petrel, Macronectes halli, which ranges slightly further north, although there is a large overlap between the distributions of the two species. Bones assigned to the genus Macronectes have been uncovered in Pleistocene and Holocene deposits in New Zealand, although these are fragmentary, and have never been assigned to species level. 

In a paper published in the journal Taxonomy on 30 January 2023, Alan Tennyson of the Museum of New Zealand Te Papa Tongarewa and Rodrigo Salvador of the Department of Arctic and Marine Biology at the Arctic University of Norway, and the Arctic University Museum of Norway, describe a new species of Giant Petrel based upon  skull and a partial humerus from the Pliocene deposits of the Tangahoe Formation in the sedimentary Whanganui Basin in the western portion of New Zealand’s North Island.

The specimens were collected from beach boulders at South Taranaki, with the two specimens about 2 km apart, making it unlikely that they came from the same original Bird. Both were found by fossil collector Alastair Johnson, the skull in 2017 and the humerus in 2019, and are now housed in the collection of the Museum of New Zealand Te Papa Tongarewa. The new species is named Macronectes tinae, where 'tinae' honours Tina King, the late partner of Alastair Johnson; the fossil skull was her favorite fossil.

Skull (holotype, NMNZ S.048502) of Macronectes tinae, partially embedded in matrix, in different views; scale bar is 5 cm. (A) Dorsal view. (B) Lateral view (right). (C) Lateral view (left). (D) Anterior view. (E) Caudal view. Tennyson & Salvador (2023).

The large bulbous bill of the skull specimen, caused by a wider and enlarged corpus ossis premaxillaris and a deeper proximal premaxilla, leaves little doubt that it belongs in the genus Macronectes. However, this skull is distinctly smaller than that of either extant species assigned to the genus, which, combined with the Pliocene age of the fossil, is deemed sufficient by Tennyson and Salvador to justify the creation of a new species.

Only the shaft and distal end of the humerus are preserved, so that the main diagnostic feature of the genus Macronectes, a weakly developed second (dorsal) fossa pneumotricipitalis muscle attachment on the proximal end, cannot be observed. However, the bone does appear to come from a Fulmarine Procellariid Bird, and is to large to belong to any known member of that group other than a Giant Petrel, as well as being of an appropriate size for Macronectes tinae, as determined by the skull, leading Tennyson and Salvador to refer it to the species.

Detail of proximal end of the left humeri of selected Procellariiformes in cranial view; scale bar is 2 cm. (A) Antarctic Petrel, Thalassoica antarctica, NMNZ OR.018975. (B) Antarctic Fulmar, Fulmarus glacialoides, NMNZ OR.017595. (C) Southern Giant Petrel, Macronectes giganteus, NMNZ OR.029141. (D) Northern Giant Petrel, Macronectes halli, NMNZ OR.029173. (E) Macronectes tinae, paratype NMNZ S.048870. (F) Indian Yellow-nosed Albatross, Thalasarche carteri, NMNZ OR.02847. Tennyson & Salvador (2023).

Macronectes tinae is similar enough to modern Giant Petrels to be placed in the same genus with a high degree of confidence. It does, nevertheless, have some morphological variations, which would have had some functional differences in the living Bird, although, given the fragmentary nature of the specimen, it is difficult to asses what these would have been. It is, however, likely to have lived in a similar environment to modern Giant Petrels, which, unlike their closest relatives, are shorebirds rather than true pelagic ocean-dwellers, and unlike them capable of walking on land, where they are gregarious opportunistic scavengers and predators. The Tangahoe Formation in Taranaki is considered to represent a shore environment, with other fossils including colonial marine Mammals and a Penguin, making it likely that Macronectes tinae lived in similar environment to its modern relatives.

Artistic reconstruction of Macronectes tinae in its palaeoenvironment. A darker plumage was chosen for the reconstruction because a darker colouration in Giant Petrels seems to be related to warmer regions, as Taranaki had warmer temperatures during the Pliocene. Simone Giovanardi in Tennyson & Salvador (2023).

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